Atsushi Niida

Orcid: 0000-0002-6851-8004

According to our database1, Atsushi Niida authored at least 16 papers between 2008 and 2020.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Bibliography

2020
Ensemble smoothers for inference of hidden states and parameters in combinatorial regulatory model.
J. Frankl. Inst., 2020

Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens.
Bioinform., 2020

2017
phyC: Clustering cancer evolutionary trees.
PLoS Comput. Biol., 2017

Interaction-Based Feature Selection for Uncovering Cancer Driver Genes Through Copy Number-Driven Expression Level.
J. Comput. Biol., 2017

2016
Binary contingency table method for analysing gene mutation in cancer genome.
Int. J. Bioinform. Res. Appl., 2016

A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models.
Comput. Stat. Data Anal., 2016

2015
Sparse Overlapping Group Lasso for Integrative Multi-Omics Analysis.
J. Comput. Biol., 2015

Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome.
Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015

2013
Multilayer Cluster Heat Map Visualizing Biological Tensor Data.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2013

2012
Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Statistical model-based testing to evaluate the recurrence of genomic aberrations.
Bioinform., 2012

2010
Model-free unsupervised gene set screening based on information enrichment in expression profiles.
Bioinform., 2010

Network profiling analysis for generating modulator-dependent gene networks.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009
Gene set-based module discovery in the breast cancer transcriptome.
BMC Bioinform., 2009

2008
Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells.
BMC Bioinform., 2008


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