Satoru Miyano

According to our database1, Satoru Miyano
  • authored at least 214 papers between 1980 and 2017.
  • has a "Dijkstra number"2 of five.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

On csauthors.net:

Bibliography

2017
A Novel Adaptive Penalized Logistic Regression for Uncovering Biomarker Associated with Anti-Cancer Drug Sensitivity.
IEEE/ACM Trans. Comput. Biology Bioinform., 2017

Interaction-Based Feature Selection for Uncovering Cancer Driver Genes Through Copy Number-Driven Expression Level.
Journal of Computational Biology, 2017

2016
Predicting Japanese Kampo formulas by analyzing database of medical records: a preliminary observational study.
BMC Med. Inf. & Decision Making, 2016

Binary contingency table method for analysing gene mutation in cancer genome.
IJBRA, 2016

A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models.
Computational Statistics & Data Analysis, 2016

D3M: detection of differential distributions of methylation levels.
Bioinformatics, 2016

OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads.
Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016

2015
Sparse Overlapping Group Lasso for Integrative Multi-Omics Analysis.
Journal of Computational Biology, 2015

Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks.
BMC Systems Biology, 2015

Inferring the global structure of chromosomes from structural variations.
BMC Genomics, 2015

Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data.
Bioinformatics, 2015

Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome.
Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015

High performance computing of a fusion gene detection pipeline on the K computer.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
A feature selection method using improved regularized linear discriminant analysis.
Mach. Vis. Appl., 2014

A feature selection method using fixed-point algorithm for DNA microarray gene expression data.
KES Journal, 2014

An Efficient Data Assimilation Schema for Restoration and Extension of Gene Regulatory Networks Using Time-Course Observation Data.
Journal of Computational Biology, 2014

An efficient method of exploring simulation models by assimilating literature and biological observational data.
Biosystems, 2014

CSML2SBML: A novel tool for converting quantitative biological pathway models from CSML into SBML.
Biosystems, 2014

HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations.
Bioinformatics, 2014

Parameter estimation in multi-compartment SIR model.
Proceedings of the 17th International Conference on Information Fusion, 2014

2013
Principal component analysis using QR decomposition.
Int. J. Machine Learning & Cybernetics, 2013

Multi-omics Approach for Estimating Metabolic Networks Using Low-Order Partial Correlations.
Journal of Computational Biology, 2013

A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition.
BMC Bioinformatics, 2013

XiP: a computational environment to create, extend and share workflows.
Bioinformatics, 2013

Multilayer Cluster Heat Map Visualizing Biological Tensor Data.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2013

Estimation of abrupt changes in sentinel observation data of influenza epidemics in Japan.
Proceedings of the 16th International Conference on Information Fusion, 2013

2012
A Top-r Feature Selection Algorithm for Microarray Gene Expression Data.
IEEE/ACM Trans. Comput. Biology Bioinform., 2012

Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods.
IEEE/ACM Trans. Comput. Biology Bioinform., 2012

Null space based feature selection method for gene expression data.
Int. J. Machine Learning & Cybernetics, 2012

A between-Class Overlapping Filter-Based Method for transcriptome Data Analysis.
J. Bioinformatics and Computational Biology, 2012

Computational gene network analysis reveals TNF-induced angiogenesis.
BMC Systems Biology, 2012

Functional clustering of time series gene expression data by Granger causality.
BMC Systems Biology, 2012

Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing.
BMC Genomics, 2012

ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs.
BMC Bioinformatics, 2012

Statistical model-based testing to evaluate the recurrence of genomic aberrations.
Bioinformatics, 2012

IRView: a database and viewer for protein interacting regions.
Bioinformatics, 2012

Identifiability of local transmissibility parameters in agent-based pandemic simulation.
Proceedings of the 15th International Conference on Information Fusion, 2012

Analysis of questionnaire for traditional medical and develop decision support system.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

2011
Estimating Genome-Wide Gene Networks Using Nonparametric Bayesian Network Models on Massively Parallel Computers.
IEEE/ACM Trans. Comput. Biology Bioinform., 2011

Inferring Contagion in Regulatory Networks.
IEEE/ACM Trans. Comput. Biology Bioinform., 2011

High Performance Hybrid Functional Petri Net Simulations of Biological Pathway Models on CUDA.
IEEE/ACM Trans. Comput. Biology Bioinform., 2011

Clustering for Visual Analogue Scale Data in Symbolic Data Analysis.
Proceedings of the Complex Adaptive Systems 2011 Conference, 2011

Hybrid Petri net based modeling for biological pathway simulation.
Natural Computing, 2011

Parallel Algorithm for Learning Optimal Bayesian Network Structure.
Journal of Machine Learning Research, 2011

2D-Qsar for 450 types of amino acid induction peptides with a novel substructure pair descriptor having wider scope.
J. Cheminformatics, 2011

INTRODUCTION - The First IEEE Conference on Healthcare Informatics, Imaging, and Systems biology HISB'11.
J. Bioinformatics and Computational Biology, 2011

Transform of visual analogue scale data and their clustering.
IJKESDP, 2011

ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information.
BMC Bioinformatics, 2011

Ontology-based instance data validation for high-quality curated biological pathways.
BMC Bioinformatics, 2011

SiGN-SSM: open source parallel software for estimating gene networks with state space models.
Bioinformatics, 2011

A rank-based statistical test for measuring synergistic effects between two gene sets.
Bioinformatics, 2011

Systems biology model repository for macrophage pathway simulation.
Bioinformatics, 2011

MIRACH: efficient model checker for quantitative biological pathway models.
Bioinformatics, 2011

CSO validator: improving manual curation workflow for biological pathways.
Bioinformatics, 2011

Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation.
Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011

Poster: Comprehensive pharmacogenomic pathway screening by data assimilation.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Estimation of macroscopic parameter in agent-based pandemic simulation.
Proceedings of the 14th International Conference on Information Fusion, 2011

Parallel Agent-Based Simulator for Influenza Pandemic.
Proceedings of the Advanced Agent Technology, 2011

Computational Drug Target Pathway Discovery: A Bayesian Network Approach.
Proceedings of the Handbook of Statistical Bioinformatics., 2011

2010
Optimal Search on Clustered Structural Constraint for Learning Bayesian Network Structure.
Journal of Machine Learning Research, 2010

Identification of Granger Causality between Gene Sets.
J. Bioinformatics and Computational Biology, 2010

Cell Illustrator 4.0: A Computational Platform for Systems Biology.
In Silico Biology, 2010

On Determining Firing Delay Time of Transitions for Petri Net Based Signaling Pathways by Introducing Stochastic Decision Rules.
In Silico Biology, 2010

Delay Time Determination for the Timed Petri Net Model of a Signaling Pathway Based on Its Structural Information.
IEICE Transactions, 2010

Time-dependent structural transformation analysis to high-level Petri net model with active state transition diagram.
BMC Systems Biology, 2010

An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information.
BMC Bioinformatics, 2010

The systems approach to the prespore-specific activation of sigma factor SigF in Bacillus subtilis.
Biosystems, 2010

Inferring dynamic gene networks under varying conditions for transcriptomic network comparison.
Bioinformatics, 2010

Model-free unsupervised gene set screening based on information enrichment in expression profiles.
Bioinformatics, 2010

DA 1.0: parameter estimation of biological pathways using data assimilation approach.
Bioinformatics, 2010

A fast and robust statistical test based on likelihood ratio with Bartlett correction to identify Granger causality between gene sets.
Bioinformatics, 2010

Granger Causality in Systems Biology: Modeling Gene Networks in Time Series Microarray Data Using Vector Autoregressive Models.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2010

Searching Optimal Bayesian Network Structure on Constraint Search Space: Super-Structure Approach.
Proceedings of the New Frontiers in Artificial Intelligence, 2010

Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Identifying Hidden Confounders in Gene Networks by Bayesian Networks.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

2009
Network-Based Predictions and Simulations by Biological State Space Models: Search for Drug Mode of Action.
J. Comput. Sci. Technol., 2009

Comparing Pearson, Spearman and Hoeffding's d Measure for Gene Expression Association Analysis.
J. Bioinformatics and Computational Biology, 2009

Recursive regularization for inferring gene networks from time-course gene expression profiles.
BMC Systems Biology, 2009

Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension.
BMC Systems Biology, 2009

BFL: a node and edge betweenness based fast layout algorithm for large scale networks.
BMC Bioinformatics, 2009

The impact of measurement errors in the identification of regulatory networks.
BMC Bioinformatics, 2009

Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

Parameter Estimation of In Silico Biological Pathways with Particle Filtering Towards a Petascale Computing.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

Better Decomposition Heuristics for the Maximum-Weight Connected Graph Problem Using Betweenness Centrality.
Proceedings of the Discovery Science, 12th International Conference, 2009

Computational Predictions for Functional Proteins Working after Cleaved in Apoptotic Pathway.
Proceedings of the 2009 International Conference on Complex, 2009

Gene Networks Viewed through Two Models.
Proceedings of the Bioinformatics and Computational Biology, 2009

Foundations of Systems Biology - Using Cell Illustrator® and Pathway Databases.
Computational Biology 13, Springer, ISBN: 978-1-84882-022-7, 2009

2008
Modeling Nonlinear Gene Regulatory Networks from Time Series Gene Expression Data.
J. Bioinformatics and Computational Biology, 2008

Systematic reconstruction of TRANSPATH data into Cell System Markup Language.
BMC Systems Biology, 2008

Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates.
BMC Systems Biology, 2008

ExonMiner: Web service for analysis of GeneChip Exon array data.
BMC Bioinformatics, 2008

Bayesian learning of biological pathways on genomic data assimilation.
Bioinformatics, 2008

Fast grid layout algorithm for biological networks with sweep calculation.
Bioinformatics, 2008

Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models.
Bioinformatics, 2008

An Algorithm to Estimate Delay Times in Petri Net Models of Signaling Pathways with Experimental Data.
Proceedings of the 3rd International ICST Conference on Bio-Inspired Models of Network, 2008

Partial Order-Based Bayesian Network Learning Algorithm for Estimating Gene Networks.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

Analyzing Time Course Gene Expression Data with Biological and Technical Replicates to Estimate Gene Networks by State Space Models.
Proceedings of the Second Asia International Conference on Modelling and Simulation, 2008

Preface.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

2007
Cell System Ontology: Representation for Modeling, Visualizing, and Simulating Biological Pathways.
In Silico Biology, 2007

On the complexity of deriving position specific score matrices from positive and negative sequences.
Discrete Applied Mathematics, 2007

Modeling gene expression regulatory networks with the sparse vector autoregressive model.
BMC Systems Biology, 2007

AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction.
BMC Bioinformatics, 2007

An efficient grid layout algorithm for biological networks utilizing various biological attributes.
BMC Bioinformatics, 2007

Statistical Absolute Evaluation of Gene Ontology Terms with Gene Expression Data.
Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007

Computational Genome-Wide Discovery of Aberrant Splice Variations with Exon Expression Profiles.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

A Structure Learning Algorithm for Inference of Gene Networks from Microarray Gene Expression Data Using Bayesian Networks.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
A Weighted Profile Based Method for Protein-RNA Interacting Residue Prediction.
, 2006

Preface: Special RECOMB 2005 Issue.
Journal of Computational Biology, 2006

A New Regulatory Interaction Suggested by Simulations for Circadian Genetic Control Mechanism in Mammals.
J. Bioinformatics and Computational Biology, 2006

Structural Modeling and Analysis of Signaling Pathways Based on Petri Nets.
J. Bioinformatics and Computational Biology, 2006

Simulation-Based Validation of the p53 Transcriptional Activity with Hybrid Functional Petri Net.
In Silico Biology, 2006

Statistical Model Selection Method to Analyze Combinatorial Effects of Snps and Environmental Factors for Binary Disease.
International Journal on Artificial Intelligence Tools, 2006

Petri Net Based Descriptions for Systematic Understanding of Biological Pathways.
IEICE Transactions, 2006

ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles.
Bioinformatics, 2006

Computational Strategy for Discovering Druggable Gene Networks from Genome-Wide RNA Expression Profiles.
Proceedings of the Biocomputing 2006, 2006

Machine Learning Prediction of Amino Acid Patterns in Protein N-myristoylation.
Proceedings of the Pattern Recognition in Bioinformatics, International Workshop, 2006

2005
Prediction of Transcriptional Terminators in Bacillus subtilis and Related Species.
PLoS Computational Biology, 2005

Utilizing Evolutionary Information and Gene Expression Data for Estimating Gene Networks with Bayesian Network Models.
J. Bioinformatics and Computational Biology, 2005

Superiority of network motifs over optimal networks and an application to the revelation of gene network evolution.
Bioinformatics, 2005

Bayesian Joint Prediction of Associated Transcription Factors in Bacillus subtilis.
Proceedings of the Biocomputing 2005, 2005

Estimating Gene Networks from Expression Data and Binding Location Data via Boolean Networks.
Proceedings of the Computational Science and Its Applications, 2005

Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data.
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

A new regulatory interaction suggested by simulations for circadian genetic control mechanism in mammals.
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005

2004
An O(N2) Algorithm for Discovering Optimal Boolean Pattern Pairs.
IEEE/ACM Trans. Comput. Biology Bioinform., 2004

Simulated Cell Division Processes of the Xenopus Cell Cycle Pathway by Genomic Object Net.
J. Integrative Bioinformatics, 2004

Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks.
J. Bioinformatics and Computational Biology, 2004

Efficiently Finding Regulatory Elements Using Correlation with Gene Expression.
J. Bioinformatics and Computational Biology, 2004

Constructing biological pathway models with hybrid functional Petri net.
In Silico Biology, 2004

Finding Optimal Pairs of Patterns.
Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004

Finding Optimal Models for Small Gene Networks.
Proceedings of the Biocomputing 2004, 2004

Using Protein-Protein Interactions for Refining Gene Networks Estimated from Microarray Data by Bayesian Networks.
Proceedings of the Biocomputing 2004, 2004

Predicting the Operon Structure of Bacillus subtilis Using Operon Length, Intergene Distance, and Gene Expression Information.
Proceedings of the Biocomputing 2004, 2004

Functional Data Analysis of the Dynamics of Gene Regulatory Networks.
Proceedings of the Knowledge Exploration in Life Science Informatics, 2004

Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data.
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

Finding Optimal Pairs of Cooperative and Competing Patterns with Bounded Distance.
Proceedings of the Discovery Science, 7th International Conference, 2004

Residual Bootstrapping and Median Filtering for Robust Estimation of Gene Networks from Microarray Data.
Proceedings of the Computational Methods in Systems Biology, International Conference, 2004

Case-Control Study of Binary Disease Trait Considering Interactions between SNPs and Environmental Effects using Logistic Regression.
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004

Integrating Biopathway Databases for Large-scale Modeling and Simulation.
Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC 2004), 2004

2003
A simple greedy algorithm for finding functional relations: efficient implementation and average case analysis.
Theor. Comput. Sci., 2003

Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model.
Theor. Comput. Sci., 2003

Use of Gene Networks for Identifying and Validating Drug Targets.
J. Bioinformatics and Computational Biology, 2003

Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network.
J. Bioinformatics and Computational Biology, 2003

Biopathways representation and simulation on hybrid functional Petri net.
In Silico Biology, 2003

Inferring gene networks from time series microarray data using dynamic Bayesian networks.
Briefings in Bioinformatics, 2003

Intrasplicing - Analysis of Long Intron Sequences.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

Boundary Formation by Notch Signaling in Drosophila Multicellular Systems: Experimental Observations and Gene Network Modeling by Genomic Object Net.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data of Bacillus Subtilis Using Differential Equations.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection.
Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003

Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

Recreating Biopathway Databases towards Simulation.
Proceedings of the Computational Methods in Systems Biology, First International Workshop, 2003

Inference, Modeling and Simulation of Gene Networks.
Proceedings of the Computational Methods in Systems Biology, First International Workshop, 2003

Dynamic Bayesian Network and Nonparametric Regression for Nonlinear Modeling of Gene Networks from Time Series Gene Expression Data.
Proceedings of the Computational Methods in Systems Biology, First International Workshop, 2003

Towards Biopathway Modeling and Simulation.
Proceedings of the Applications and Theory of Petri Nets 2003, 2003

2002
Fast algorithm for extracting multiple unordered short motifs using bit operations.
Inf. Sci., 2002

Statistical analysis of a small set of time-ordered gene expression data using linear splines.
Bioinformatics, 2002

Extensive feature detection of N-terminal protein sorting signals.
Bioinformatics, 2002

Estimation of Genetic Networks and Functional Structures Between Genes by Using Bayesian Networks and Nonparametric Regression.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

Fast Algorithm for Extracting Multiple Unordered Short Motifs Using Bit Operations.
Proceedings of the 6th Joint Conference on Information Science, 2002

Foundations of Designing Computational Knowledge Discovery Processes.
Proceedings of the Progress in Discovery Science, 2002

Toward Drawing an Atlas of Hypothesis Classes: Approximating a Hypothesis via Another Hypothesis Model.
Proceedings of the Discovery Science, 5th International Conference, 2002

Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data Using Differential Equations.
Proceedings of the Discovery Science, 5th International Conference, 2002

Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network.
Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002

On the Complexity of Deriving Position Specific Score Matrices from Examples.
Proceedings of the Combinatorial Pattern Matching, 13th Annual Symposium, 2002

2001
Challenges for Intelligent Systems in Biology.
IEEE Intelligent Systems, 2001

HypothesisCreator: Concepts for Accelerating the Computational Knowledge Discovery Process.
Electron. Trans. Artif. Intell., 2001

ProDDO: a database of disordered proteins from the Protein Data Bank (PDB).
Bioinformatics, 2001

Views: Fundamental Building Blocks in the Process of Knowledge Discovery.
Proceedings of the Fourteenth International Florida Artificial Intelligence Research Society Conference, 2001

Learning Conformation Rules.
Proceedings of the Discovery Science, 4th International Conference, DS 2001, Washington, 2001

VML: A View Modeling Language for Computational Knowledge Discovery.
Proceedings of the Discovery Science, 4th International Conference, DS 2001, Washington, 2001

2000
Polynomial-time Learning of Elementary Formal Systems.
New Generation Comput., 2000

Algorithms for Identifying Boolean Networks and Related Biological Networks Based on Matrix Multiplication and Fingerprint Function.
Journal of Computational Biology, 2000

Inferring qualitative relations in genetic networks and metabolic pathways.
Bioinformatics, 2000

Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function.
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

A Simple Greedy Algorithm for Finding Functional Relations: Efficient Implementation and Average Case Anaylsis.
Proceedings of the Discovery Science, 2000

1999
Foreword: Genome Informatics.
Theor. Comput. Sci., 1999

On the Approximation of Protein Threading.
Theor. Comput. Sci., 1999

Foreword.
J. Comb. Optim., 1999

Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model.
Proceedings of the 4th Pacific Symposium on Biocomputing, 1999

Designing Views in HypothesisCreator: System for Assisting in Discovery.
Proceedings of the Discovery Science, 1999

A Definition of Discovery in Terms of Generalized Descriptional Complexity.
Proceedings of the Discovery Science, 1999

1998
Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions.
Proceedings of the Ninth Annual ACM-SIAM Symposium on Discrete Algorithms, 1998

Toward Genomic Hypothesis Creator: View Designer for Discovery.
Proceedings of the Discovery Science, 1998

1997
An Approximation Algorithm for the Minimum Common Supertree Problem.
Nord. J. Comput., 1997

On the approximation of protein threading.
Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, 1997

1996
Inferring a Tree from Walks.
Theor. Comput. Sci., 1996

Extracting Best Consensus Motifs from Positive and Negative Examples.
Proceedings of the STACS 96, 1996

Genome Informatics: New Frontiers of Computer Science and Biosciences.
CODAS, 1996

1995
Using Maximal Independent Sets to Solve Problems in Parallel.
Theor. Comput. Sci., 1995

Parallel Algorithms for Refutation Tree Problem on Formal Graph Systems.
IEICE Transactions, 1995

Complexity of Finding Alphabet Indexing.
IEICE Transactions, 1995

Learning Theory Toward Genome Informatics.
IEICE Transactions, 1995

Graph Inference from a Walk for TRees of Bounded Degree 3 is NP-Complete.
Proceedings of the Mathematical Foundations of Computer Science 1995, 1995

BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences.
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

Algorithmic Problems Arising from Genome Informatics (Abstract).
Proceedings of the Algorithms and Computation, 6th International Symposium, 1995

1994
Machine Learning and Discovery for Bloinformatics: Introduction.
Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

1993
A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns.
New Generation Comput., 1993

Learning Theory Toward Genome Informatics.
Proceedings of the Algorithmic Learning Theory, 4th International Workshop, 1993

1992
Inferring a Tree from Walks.
Proceedings of the Mathematical Foundations of Computer Science 1992, 1992

A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns.
FGCS, 1992

1991
Delta_2^P-Complete Lexicographically First Maximal Subgraph Problems.
Theor. Comput. Sci., 1991

More About Learning Elementary Formal Systems.
Proceedings of the Nonmonotonic and Inductive Logic, 1991

1990
Teachability in Computational Learning.
Proceedings of the Algorithmic Learning Theory, First International Workshop, 1990

1989
The Lexicographically First Maximum Subgraph Problems: P-Completeness and NC Algorithms.
Mathematical Systems Theory, 1989

1988
A Parallelizable Lexicographically First Maximal Edge-Induced Subgraph Problem.
Inf. Process. Lett., 1988

Δ2p-Complete Lexicographically First Maximal Subgraph Problems.
Proceedings of the Mathematical Foundations of Computer Science 1988, 1988

Parallel Complexity and P-Complete Problems.
FGCS, 1988

1987
The Lexicographically First Maximal Subgraph Problems: P-Completeness and NC Algorithms.
Proceedings of the Automata, Languages and Programming, 14th International Colloquium, 1987

1984
Alternating Finite Automata on omega-Words.
Theor. Comput. Sci., 1984

Remarks on Two-Way Automata with Weak-Counters.
Inf. Process. Lett., 1984

Alternating Finite Automata on omega-Words.
Proceedings of the CAAP'84, 1984

1983
Remarks on Multihead Pushdown Automata and Multihead Stack Automata.
J. Comput. Syst. Sci., 1983

1982
Two-Way Deterministic Multi-Weak-Counter Machines.
Theor. Comput. Sci., 1982

A Hierarchy Theorem for Multihead Stack-Counter Automata.
Acta Inf., 1982

1980
One-Way Weak-Stack-Counter Automata.
J. Comput. Syst. Sci., 1980


  Loading...