Ryo Yoshida

According to our database, Ryo Yoshida authored at least 53 papers between 1993 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Tree-Planted Transformers: Large Language Models with Implicit Syntactic Supervision.

Ryo Yoshida, Taiga Someya, Yohei Oseki

CoRR, 2024

Emergent Word Order Universals from Cognitively-Motivated Language Models.

Tatsuki Kuribayashi, Ryo Ueda, Ryo Yoshida, Yohei Oseki, Ted Briscoe, Timothy Baldwin

CoRR, 2024

2023

SMiPoly: Generation of a Synthesizable Polymer Virtual Library Using Rule-Based Polymerization Reactions.

Mitsuru Ohno, Yoshihiro Hayashi, Qi Zhang, Yu Kaneko, Ryo Yoshida

J. Chem. Inf. Model., September, 2023

Expansion of Motor High-Efficiency Area by Inserting Magnetic Composite Material into Rotor.

Mitsuhide Sato, Keigo Takazawa, Ryo Yoshida, Masami Nirei, Tsutomu Mizuno

IEEE Access, 2023

Transfer Learning with Affine Model Transformation.

Shunya Minami, Kenji Fukumizu, Yoshihiro Hayashi, Ryo Yoshida

Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

2022

Functional Output Regression for Machine Learning in Materials Science.

Megumi Iwayama, Stephen Wu, Chang Liu, Ryo Yoshida

J. Chem. Inf. Model., 2022

Bayesian Sequential Stacking Algorithm for Concurrently Designing Molecules and Synthetic Reaction Networks.

Qi Zhang, Chang Liu, Stephen Wu, Ryo Yoshida

CoRR, 2022

Crystal structure prediction with machine learning-based element substitution.

Minoru Kusaba, Chang Liu, Ryo Yoshida

CoRR, 2022

Composition, Attention, or Both?

Ryo Yoshida, Yohei Oseki

Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2022, 2022

2021

Modeling Human Sentence Processing with Left-Corner Recurrent Neural Network Grammars.

Ryo Yoshida, Hiroshi Noji, Yohei Oseki

Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing, 2021

Lower Perplexity is Not Always Human-Like.

Tatsuki Kuribayashi, Yohei Oseki, Takumi Ito, Ryo Yoshida, Masayuki Asahara, Kentaro Inui

Proceedings of the 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language Processing, 2021

A General Class of Transfer Learning Regression without Implementation Cost.

Shunya Minami, Song Liu, Stephen Wu, Kenji Fukumizu, Ryo Yoshida

Proceedings of the Thirty-Fifth AAAI Conference on Artificial Intelligence, 2021

2020

Bayesian Algorithm for Retrosynthesis.

Zhongliang Guo, Stephen Wu, Mitsuru Ohno, Ryo Yoshida

J. Chem. Inf. Model., 2020

2019

Recreation of the Periodic Table with an Unsupervised Machine Learning Algorithm.

Minoru Kusaba, Chang Liu, Yukinori Koyama, Kiyoyuki Terakura, Ryo Yoshida

CoRR, 2019

Statistical inference of the rate of RNA polymerase II elongation by total RNA sequencing.

Yumi Kawamura, Shinsuke Koyama, Ryo Yoshida

Bioinform., 2019

2018

SPF-CellTracker: Tracking Multiple Cells with Strongly-Correlated Moves Using a Spatial Particle Filter.

Osamu Hirose, Shotaro Kawaguchi, Terumasa Tokunaga, Yu Toyoshima, Takayuki Teramoto, Sayuri Kuge, Takeshi Ishihara, Yuichi Iino, Ryo Yoshida

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

2017

Bayesian molecular design with a chemical language model.

Hisaki Ikebata, Kenta Hongo, Tetsu Isomura, Ryo Maezono, Ryo Yoshida

J. Comput. Aided Mol. Des., 2017

2016

Accurate Automatic Detection of Densely Distributed Cell Nuclei in 3D Space.

Yu Toyoshima, Terumasa Tokunaga, Osamu Hirose, Manami Kanamori, Takayuki Teramoto, Moon Sun Jang, Sayuri Kuge, Takeshi Ishihara, Ryo Yoshida, Yuichi Iino

PLoS Comput. Biol., 2016

2015

Repulsive parallel MCMC algorithm for discovering diverse motifs from large sequence sets.

Hisaki Ikebata, Ryo Yoshida

Bioinform., 2015

2014

Atom Environment Kernels on Molecules.

Hiroshi Yamashita, Tomoyuki Higuchi, Ryo Yoshida

J. Chem. Inf. Model., 2014

Automated detection and tracking of many cells by using 4D live-cell imaging data.

Terumasa Tokunaga, Osamu Hirose, Shotaro Kawaguchi, Yu Toyoshima, Takayuki Teramoto, Hisaki Ikebata, Sayuri Kuge, Takeshi Ishihara, Yuichi Iino, Ryo Yoshida

Bioinform., 2014

2013

Self-oscillating polymer gels as novel biomimetic materials.

Ryo Yoshida

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

A study on EGG affected by viscosity and shear rate dependence of fluid and semi-solid diets.

Tatsuya Ishikawa, Ryo Yoshida, Keita Takahashi, Hiroshi Inoue, Akira Kobayashi

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

2012

Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods.

Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

2011

SiGN-SSM: open source parallel software for estimating gene networks with state space models.

Yoshinori Tamada, Rui Yamaguchi, Seiya Imoto, Osamu Hirose, Ryo Yoshida, Masao Nagasaki, Satoru Miyano

Bioinform., 2011

2010

Design of Self-Oscillating Gels and Application to Biomimetic Actuators.

Ryo Yoshida

Sensors, 2010

Bayesian Learning in Sparse Graphical Factor Models via Variational Mean-Field Annealing.

Ryo Yoshida, Mike West

J. Mach. Learn. Res., 2010

Bayesian experts in exploring reaction kinetics of transcription circuits.

Ryo Yoshida, Masaya M. Saito, Hiromichi Nagao, Tomoyuki Higuchi

Bioinform., 2010

Implementation of Sequential Importance Sampling in GPGPU.

Keisuke Hayashi, Masaya M. Saito, Ryo Yoshida, Tomoyuki Higuchi

Proceedings of the 13th Conference on Information Fusion, 2010

Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning.

Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009

Parameter Estimation of In Silico Biological Pathways with Particle Filtering Towards a Petascale Computing.

Kazuyuki Nakamura, Ryo Yoshida, Masao Nagasaki, Satoru Miyano, Tomoyuki Higuchi

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

Chemical robot-design of peristaltic polymer gel actuator-.

Shingo Maeda, Yusuke Hara, Ryo Yoshida, Shuji Hashimoto

Proceedings of the 2009 IEEE/RSJ International Conference on Intelligent Robots and Systems, 2009

Development of novel self-oscillating molecular robot fueled by organic acid.

Yusuke Hara, Shingo Maeda, Ryo Yoshida, Shuji Hashimoto

Proceedings of the 2009 IEEE/RSJ International Conference on Intelligent Robots and Systems, 2009

2008

ExonMiner: Web service for analysis of GeneChip Exon array data.

Kazuyuki Numata, Ryo Yoshida, Masao Nagasaki, Ayumu Saito, Seiya Imoto, Satoru Miyano

BMC Bioinform., 2008

Bayesian learning of biological pathways on genomic data assimilation.

Ryo Yoshida, Masao Nagasaki, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tomoyuki Higuchi

Bioinform., 2008

Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models.

Osamu Hirose, Ryo Yoshida, Seiya Imoto, Rui Yamaguchi, Tomoyuki Higuchi, Stephen D. Charnock-Jones, Cristin G. Print, Satoru Miyano

Bioinform., 2008

Self-Oscillating Gel Actuator for Chemical Robotics.

Shingo Maeda, Yusuke Hara, Ryo Yoshida, Shuji Hashimoto

Adv. Robotics, 2008

A New Cell Phone Remote Control for People with Visual Impairment.

Ryo Yoshida, Michiaki Yasumura

Proceedings of the Computers Helping People with Special Needs, 2008

Analyzing Time Course Gene Expression Data with Biological and Technical Replicates to Estimate Gene Networks by State Space Models.

Osamu Hirose, Ryo Yoshida, Rui Yamaguchi, Seiya Imoto, Tomoyuki Higuchi, Satoru Miyano

Proceedings of the Second Asia International Conference on Modelling and Simulation, 2008

2007

Finding module-based gene networks with state-space models - Mining high-dimensional and short time-course gene expression data.

Rui Yamaguchi, Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi, Satoru Miyano

IEEE Signal Process. Mag., 2007

Statistical Absolute Evaluation of Gene Ontology Terms with Gene Expression Data.

Pramod K. Gupta, Ryo Yoshida, Seiya Imoto, Rui Yamaguchi, Satoru Miyano

Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007

Chemical robot - Design of self-walking gel.

Shingo Maeda, Yusuke Hara, Ryo Yoshida, Shuji Hashimoto

Proceedings of the 2007 IEEE/RSJ International Conference on Intelligent Robots and Systems, October 29, 2007

Computational Genome-Wide Discovery of Aberrant Splice Variations with Exon Expression Profiles.

Ryo Yoshida, Kazuyuki Numata, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Kazuko Ueno, Satoru Miyano

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles.

Ryo Yoshida, Tomoyuki Higuchi, Seiya Imoto, Satoru Miyano

Bioinform., 2006

Prototyping and Evaluation of New Remote Controls for People with Visual Impairment.

Michiaki Yasumura, Ryo Yoshida, Megumi Yoshida

Proceedings of the Computers Helping People with Special Needs, 2006

2005

A Penalized Likelihood Estimation on Transcriptional Module-Based Clustering.

Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi

Proceedings of the Computational Science and Its Applications, 2005

Estimating Time-Dependent Gene Networks from Time Series Microarray Data by Dynamic Linear Models with Markov Switching.

Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, 2005

2004

Design of chemo-mechanical actuator using self-oscillating gel.

Shingo Maeda, Shuji Hashimoto, Ryo Yoshida

Proceedings of the 2004 IEEE International Conference on Robotics and Biomimetics, 2004

A Mixed Factors Model for Dimension Reduction and Extraction of a Group Structure in Gene Expression Data.

Ryo Yoshida, Tomoyuki Higuchi, Seiya Imoto

Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2000

3D web environment for knowledge management.

Ryo Yoshida, Takaaki Murao, Tatsuo Miyazawa

Future Gener. Comput. Syst., 2000

1998

Reactive Virtual Environment System: LivingWorlds multi-user world.

Ryo Yoshida, Carmine F. Greco

Proceedings of the 4th Eurographics Workshop on Virtual Environments, 1998

1996

Integrated medical-image system for cancer research and treatment.

Ryutarou Ohbuchi, Tatsuo Miyazawa, Masaki Aono, Akio Koide, Masahiko Kimura, Ryo Yoshida

IBM J. Res. Dev., 1996

1993

Clinical planning support system-CliPSS.

Ryo Yoshida, Tatsuo Miyazawa, Akio Doi, Taisuke Otsuki

IEEE Computer Graphics and Applications, 1993