Barry Honig

According to our database, Barry Honig authored at least 18 papers between 1991 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

Integration of Multi-Omics Data for Gene Regulatory Network Inference and Application to Breast Cancer.

Lin Yuan, Lehang Guo, Chang-an Yuan, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

2018

Mutli-Features Prediction of Protein Translational Modification Sites.

Wenzheng Bao, Chang-An Yuan, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

2017

miRNA-Disease Association Prediction with Collaborative Matrix Factorization.

Zhen Shen, You-Hua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang

Complex., 2017

2015

Predicting Peptide-Mediated Interactions on a Genome-Wide Scale.

T. Scott Chen, Donald Petrey, José Ignacio Garzón, Barry Honig

PLoS Comput. Biol., 2015

2014

OnTheFly: a database of <i>Drosophila melanogaster</i> transcription factors and their binding sites.

Shula Shazman, Hunjoong Lee, Yakov Socol, Richard S. Mann, Barry Honig

Nucleic Acids Res., 2014

2013

PrePPI: a structure-informed database of protein-protein interactions.

Qiangfeng Cliff Zhang, Donald Petrey, José Ignacio Garzón, Lei Deng, Barry Honig

Nucleic Acids Res., 2013

2012

Using systems and structure biology tools to dissect cellular phenotypes.

Aris Floratos, Barry Honig, Dana Pe'er, Andrea Califano

J. Am. Medical Informatics Assoc., 2012

2011

Using Structure to Explore the Sequence Alignment Space of Remote Homologs.

Andrew Kuziemko, Barry Honig, Donald Petrey

PLoS Comput. Biol., 2011

PredUs: a web server for predicting protein interfaces using structural neighbors.

Qiangfeng Cliff Zhang, Lei Deng, Markus Fisher, Jihong Guan, Barry Honig, Donald Petrey

Nucleic Acids Res., 2011

MarkUs: a server to navigate sequence-structure-function space.

Markus Fischer, Qiangfeng Cliff Zhang, Fabian Dey, Brian Y. Chen, Barry Honig, Donald Petrey

Nucleic Acids Res., 2011

2010

VASP: A Volumetric Analysis of Surface Properties Yields Insights into Protein-Ligand Binding Specificity.

Brian Y. Chen, Barry Honig

PLoS Comput. Biol., 2010

PUDGE: a flexible, interactive server for protein structure prediction.

Raquel Norel, Donald Petrey, Barry Honig

Nucleic Acids Res., 2010

2006

VISTAL - a new 2D visualization tool of protein 3D structural alignments.

Rachel Kolodny, Barry Honig

Bioinform., 2006

2003

Target Explorer: an automated tool for the identification of new target genes for a specified set of transcription factors.

Alona Sosinsky, Christopher P. Bonin, Richard S. Mann, Barry Honig

Nucleic Acids Res., 2003

2002

Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: Applications to the molecular systems and geometric objects.

Walter Rocchia, Sundaram Sridharan, Anthony Nicholls, Emil Alexov, Alessandro Chiabrera, Barry Honig

J. Comput. Chem., 2002

Bioinformatics in structural genomics - Editorial.

Burkhard Rost, Barry Honig, Alfonso Valencia

Bioinform., 2002

1995

A Fast Multipole Boundary Element Method for Molecular Electrostatics: An Optimal Approach for Large Systems.

Ranganathan Bharadwaj, Andreas Windemuth, S. Sriharan, Barry Honig, Antony Nocholls

J. Comput. Chem., 1995

1991

The inclusion of electrostatic hydration energies in molecular mechanics calculations.

Michael K. Gilson, Barry Honig

J. Comput. Aided Mol. Des., 1991