Andrea Califano

According to our database1, Andrea Califano authored at least 52 papers between 1988 and 2019.

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Bibliography

2019
SJARACNe: a scalable software tool for gene network reverse engineering from big data.
Bioinformatics, 2019

2018
ZCCHC17 is a master regulator of synaptic gene expression in Alzheimer's disease.
Bioinformatics, 2018

iterClust: a statistical framework for iterative clustering analysis.
Bioinformatics, 2018

2017
Systematic, network-based characterization of therapeutic target inhibitors.
PLoS Computational Biology, 2017

Accelerated parallel algorithm for gene network reverse engineering.
BMC Systems Biology, 2017

CTD2 Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network.
Database, 2017

2016
ScreenBEAM: a novel meta-analysis algorithm for functional genomics screens via Bayesian hierarchical modeling.
Bioinformatics, 2016

ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information.
Bioinformatics, 2016

Detection and removal of spatial bias in multiwell assays.
Bioinformatics, 2016

2015
Preface: RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2014 Special Issue.
Journal of Computational Biology, 2015

The Cyni framework for network inference in Cytoscape.
Bioinformatics, 2015

DIGGIT: a Bioconductor package to infer genetic variants driving cellular phenotypes.
Bioinformatics, 2015

2014
A promoter-level mammalian expression atlas.
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Nature, 2014

RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2013 Special Issue.
Journal of Computational Biology, 2014

2013
Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling.
PLoS Computational Biology, 2013

Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2012 Special Issue.
Journal of Computational Biology, 2013

2012
Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2011 Special Issue.
Journal of Computational Biology, 2012

Using systems and structure biology tools to dissect cellular phenotypes.
JAMIA, 2012

2011
Preface.
Journal of Computational Biology, 2011

Keynote: A systems biology approach to integrative cancer genomics.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010
geWorkbench: an open source platform for integrative genomics.
Bioinformatics, 2010

2009
New JBI emphasis on translational bioinformatics.
J. Biomed. Informatics, 2009

Dissecting the Interface Between Signaling and Transcriptional Regulation in Human B Cells.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

Master Regulators Used As Breast Cancer Metastasis Classifier.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2007
Hui-Huang Hsu, Advanced Data Mining Technologies in Bioinformatics, Editors: Idea Group Publishing, pp 239.
J. Biomed. Informatics, 2007

ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding.
BMC Bioinformatics, 2007

Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006
ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context.
BMC Bioinformatics, 2006

Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes.
Proceedings of the Research in Computational Molecular Biology, 2006

A Context-Specific Network of Protein-DNA and Protein-Protein Interactions Reveals New Regulatory Motifs in Human B Cells.
Proceedings of the Systems Biology and Computational Proteomics, 2006

Transcription Factor Centric Discovery of Regulatory Elements in Mammalian Genomes Using Alignment-Independent Conservation Maps.
Proceedings of the Comparative Genomics, 2006

2003
CASTOR: Clustering Algorithm for Sequence Taxonomical Organization and Relationships.
Journal of Computational Biology, 2003

2001
Functional classification of proteins by pattern discovery and top-down clustering of primary sequences.
IBM Systems Journal, 2001

2000
Systematic and Fully Automated Identification of Protein Sequence Patterns.
Journal of Computational Biology, 2000

SPLASH: structural pattern localization analysis by sequential histograms.
Bioinformatics, 2000

Systematic and automated discovery of patterns in PROSITE families.
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

Analysis of Gene Expression Microarrays for Phenotype Classification.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

1999
Representation and Matching of Small Flexible Molecules in Large Databases of 3D Molecular Information.
Proceedings of the Pattern Discovery in Biomolecular Data: Tools, 1999

1998
A High-Dimensional Indexing Scheme for Scalable Fingerprint-Based Identification.
Proceedings of the Computer Vision, 1998

1996
Data- and Model-Driven Multiresolution Processing.
Comput. Vis. Image Underst., 1996

1994
Multidimensional Indexing for Recognizing Visual Shapes.
IEEE Trans. Pattern Anal. Mach. Intell., 1994

1993
FLASH: A Fast Look-Up Algorithm for String Homology.
Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993

Systematic design of indexing strategies for object recognition.
Proceedings of the Conference on Computer Vision and Pattern Recognition, 1993

1992
The Multiple Window Parameter Transform.
IEEE Trans. Pattern Anal. Mach. Intell., 1992

A Complete and Extendable Approach to Visual Recognition.
IEEE Trans. Pattern Anal. Mach. Intell., 1992

1990
Data and model driven foveation.
Proceedings of the 10th IAPR International Conference on Pattern Recognition, 1990

Active 3D object models.
Proceedings of the Third International Conference on Computer Vision, 1990

Generalized Shape Autocorrelation.
Proceedings of the 8th National Conference on Artificial Intelligence. Boston, Massachusetts, USA, July 29, 1990

1989
A Homogeneous Framework for Visual Recognition.
Proceedings of the 11th International Joint Conference on Artificial Intelligence. Detroit, 1989

Generalized neighborhoods: a new approach to complex parameter feature extraction.
Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 1989

Visual recognition using concurrent and layered parameter networks.
Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 1989

1988
Feature Recognition Using Correlated Information Contained in Multiple Neighborboods.
Proceedings of the 7th National Conference on Artificial Intelligence, 1988


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