Burkhard Rost

According to our database1, Burkhard Rost authored at least 83 papers between 1992 and 2018.

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Bibliography

2018
NLSdb - major update for database of nuclear localization signals and nuclear export signals.
Nucleic Acids Research, 2018

LocText: relation extraction of protein localizations to assist database curation.
BMC Bioinformatics, 2018

HFSP: high speed homology-driven function annotation of proteins.
Bioinformatics, 2018

2017
Bioinformatics advances biology and medicine by turning big data troves into knowledge.
Informatik Spektrum, 2017

nala: text mining natural language mutation mentions.
Bioinformatics, 2017

2016
Predicted Molecular Effects of Sequence Variants Link to System Level of Disease.
PLoS Computational Biology, 2016

Tools and data services registry: a community effort to document bioinformatics resources.
Nucleic Acids Research, 2016

MSAViewer: interactive JavaScript visualization of multiple sequence alignments.
Bioinformatics, 2016

2015
ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus.
PLoS Computational Biology, 2015

Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus.
Bioinformatics, 2015

Evolutionary profiles improve protein-protein interaction prediction from sequence.
Bioinformatics, 2015

More challenges for machine-learning protein interactions.
Bioinformatics, 2015

2014
PredictProtein - an open resource for online prediction of protein structural and functional features.
Nucleic Acids Research, 2014

LocTree3 prediction of localization.
Nucleic Acids Research, 2014

FreeContact: fast and free software for protein contact prediction from residue co-evolution.
BMC Bioinformatics, 2014

ISCB: past-present perspective for the International Society for Computational Biology.
Bioinformatics, 2014

tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles.
Database, 2014

2013
ISCB Computational Biology Wikipedia Competition.
PLoS Computational Biology, 2013

Homology-based inference sets the bar high for protein function prediction.
BMC Bioinformatics, 2013

ISCB: past-present perspective for the International Society for Computational Biology.
Bioinformatics, 2013

2012
Alternative Protein-Protein Interfaces Are Frequent Exceptions.
PLoS Computational Biology, 2012

SNPdbe: constructing an nsSNP functional impacts database.
Bioinformatics, 2012

Paving the future: finding suitable ISMB venues.
Bioinformatics, 2012

LocTree2 predicts localization for all domains of life.
Bioinformatics, 2012

2011
ISCB Public Policy Statement on Open Access to Scientific and Technical Research Literature.
PLoS Computational Biology, 2011

LocDB: experimental annotations of localization for Homo sapiens and Arabidopsis thaliana.
Nucleic Acids Research, 2011

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference.
BMC Bioinformatics, 2011

2010
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.
Nucleic Acids Research, 2010

Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be.
Bioinformatics, 2010

2009
Correlating protein function and stability through the analysis of single amino acid substitutions.
BMC Bioinformatics, 2009

2008
ISMB 2008 Toronto.
PLoS Computational Biology, 2008

Physical protein-protein interactions predicted from microarrays.
Bioinformatics, 2008

Powerful fusion: PSI-BLAST and consensus sequences.
Bioinformatics, 2008

MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence.
Bioinformatics, 2008

SNAP predicts effect of mutations on protein function.
Bioinformatics, 2008

Comprehensive in silico mutagenesis highlights functionally important residues in proteins.
Proceedings of the ECCB'08 Proceedings, 2008

2007
Natively Unstructured Loops Differ from Other Loops.
PLoS Computational Biology, 2007

Protein-Protein Interaction Hotspots Carved into Sequences.
PLoS Computational Biology, 2007

ISMB/ECCB 2007: The Premier Conference on Computational Biology.
PLoS Computational Biology, 2007

Natively unstructured regions in proteins identified from contact predictions.
Bioinformatics, 2007

ISIS: interaction sites identified from sequence.
Bioinformatics, 2007

Prediction of DNA-binding residues from sequence.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006
Protein-Protein Interactions More Conserved within Species than across Species.
PLoS Computational Biology, 2006

Epitome: database of structure-inferred antigenic epitopes.
Nucleic Acids Research, 2006

PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins.
Nucleic Acids Research, 2006

PROFbval: predict flexible and rigid residues in proteins.
Bioinformatics, 2006

Create and assess protein networks through molecular characteristics of individual proteins.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005
NMPdb: Database of Nuclear Matrix Proteins.
Nucleic Acids Research, 2005

EVAcon: a protein contact prediction evaluation service.
Nucleic Acids Research, 2005

PROFcon: novel prediction of long-range contacts.
Bioinformatics, 2005

ISMB 2005 Organization.
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

ISMB 2005.
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004
The PredictProtein server.
Nucleic Acids Research, 2004

LOCnet and LOCtarget: sub-cellular localization for structural genomics targets.
Nucleic Acids Research, 2004

NLProt: extracting protein names and sequences from papers.
Nucleic Acids Research, 2004

CHOP: parsing proteins into structural domains.
Nucleic Acids Research, 2004

Annotating Protein Function through Lexical Analysis.
AI Magazine, 2004

AI and Bioinformatics.
AI Magazine, 2004

Protein names precisely peeled off free text.
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

2003
The PredictProtein server.
Nucleic Acids Research, 2003

LOC3D: annotate sub-cellular localization for protein structures.
Nucleic Acids Research, 2003

NLSdb: database of nuclear localization signals.
Nucleic Acids Research, 2003

UniqueProt: creating representative protein sequence sets.
Nucleic Acids Research, 2003

NORSp: predictions of long regions without regular secondary structure.
Nucleic Acids Research, 2003

EVA: evaluation of protein structure prediction servers.
Nucleic Acids Research, 2003

Static benchmarking of membrane helix predictions.
Nucleic Acids Research, 2003

META-PP: single interface to crucial prediction servers.
Nucleic Acids Research, 2003

PEP: Predictions for Entire Proteomes.
Nucleic Acids Research, 2003

DSSPcont: continuous secondary structure assignments for proteins.
Nucleic Acids Research, 2003

2002
Bioinformatics in structural genomics - Editorial.
Bioinformatics, 2002

Target space for structural genomics revisited.
Bioinformatics, 2002

Inferring sub-cellular localization through automated lexical analysis.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

ISMB 2002
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

2001
EVA: continuous automatic evaluation of protein structure prediction servers.
Bioinformatics, 2001

1999
A platform for integrating threading results with protein family analyses.
Bioinformatics, 1999

1997
Sisyphus and prediction of protein structure.
Computer Applications in the Biosciences, 1997

Learning from Evolution to Predict Protein Structure.
Proceedings of the Biocomputing and emergent computation: Proceedings of BCEC97, 1997

1996
Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming.
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996

1995
TOPITS: Threading One-Dimensional Predictions Into Three-Dimensional Structures.
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

1994
Neuronale Netzwerke und evolutionäre Information: verbesserte Vorhersage der Sekundärstruktur von Proteinen ; (abgefasst in Englisch).
PhD thesis, 1994

PHD - an automatic mail server for protein secondary structure prediction.
Computer Applications in the Biosciences, 1994

Evolution and Neural Networks - Protein Secondary Structure Prediction Above 71% Accuracy.
Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

1992
Exercising Multi-Layered Networks on Protein Secondary Structure.
Int. J. Neural Syst., 1992


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