Bianca Habermann

According to our database, Bianca Habermann authored at least 14 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Phasik: a Python package to identify system states in partially temporal networks.

Maxime Lucas, Alex Townsend-Teague, Matteo Neri, Simone Poetto, Arthur Morris, Bianca Habermann, Laurent Tichit

J. Open Source Softw., December, 2023

2022

The mitoXplorer 2.0 update: integrating and interpreting mitochondrial expression dynamics within a cellular context.

Fabio Marchiano, Margaux Haering, Bianca Hermine Habermann

Nucleic Acids Res., 2022

2018

SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data.

Roman Prytuliak, Friedhelm Pfeiffer, Bianca Habermann

BMC Bioinform., 2018

Integrative analysis and machine learning on cancer genomics data using the Cancer Systems Biology Database (CancerSysDB).

Rasmus Krempel, Pranav Kulkarni, Annie Yim, Ulrich Lang, Bianca Habermann, Peter Frommolt

BMC Bioinform., 2018

2017

HH-MOTiF: de novo detection of short linear motifs in proteins by Hidden Markov Model comparisons.

Roman Prytuliak, Michael Volkmer, Markus Meier, Bianca Habermann

Nucleic Acids Res., 2017

2015

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.

Jose M. Villaveces, Rafael C. Jiménez, Pablo Porras, Noemi del-Toro, Margaret J. Duesbury, Marine Dumousseau, Sandra E. Orchard, H. Choi, Peipei Ping, N. C. Zong, Manor Askenazi, Bianca Habermann, Henning Hermjakob

Database J. Biol. Databases Curation, 2015

2014

morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring.

Ines Wagner, Michael Volkmer, Malvika Sharan, Jose M. Villaveces, Felix Oswald, Vineeth Surendranath, Bianca Habermann

BMC Bioinform., 2014

2013

Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema.

Ron M. Stewart, Cynthia Alexander Rascón, Shulan Tian, Jeff Nie, Chris Barry, Li-Fang Chu, Hamisha Ardalani, Ryan J. Wagner, Mitchell D. Probasco, Jennifer M. Bolin, Ning Leng, Srikumar Sengupta, Michael Volkmer, Bianca Habermann, Elly M. Tanaka, James A. Thomson, Colin N. Dewey

PLoS Comput. Biol., 2013

2010

SeLOX - a locus of recombination site search tool for the detection and directed evolution of site-specific recombination systems.

Vineeth Surendranath, Janet Chusainow, Joachim Hauber, Frank Buchholz, Bianca Habermann

Nucleic Acids Res., 2010

2009

A user-centred evaluation framework for the Sealife semantic web browsers.

Helen Oliver, Gayo Diallo, Ed de Quincey, Dimitra Alexopoulou, Bianca Habermann, Patty Kostkova, Michael Schroeder, Simon Jupp, Khaled Khelif, Robert Stevens, Gawesh Jawaheer, Gemma Madle

BMC Bioinform., 2009

Mining for Patterns of Semantic Link Usage: Do Domain Users Actually Like Semantic Browsing?

Ed de Quincey, Helen Oliver, Patty Kostkova, Gawesh Jawaheer, Gemma Madle, Gayo Diallo, Dimitra Alexopoulou, Michael Schroeder, Bianca Habermann, Khaled Khelif, Simon Jupp, Robert Stevens

Proceedings of the 2009 IEEE/WIC/ACM International Conference on Web Intelligence and International Conference on Intelligent Agent Technology, 2009

2006

ProFAT: a web-based tool for the functional annotation of protein sequences.

Charles Richard Bradshaw, Vineeth Surendranath, Bianca Habermann

BMC Bioinform., 2006

Sealife: A Semantic Grid Browser for the Life Sciences Applied to the Study of Infectious Diseases.

Michael Schroeder, Albert Burger, Patty Kostkova, Robert Stevens, Bianca Habermann, Rose Dieng-Kuntz

Proceedings of the Challenges and Opportunities of HealthGrids, 2006

2004

DEQOR: a web-based tool for the design and quality control of siRNAs.

Andreas Henschel, Frank Buchholz, Bianca Habermann

Nucleic Acids Res., 2004