Michael Schroeder
Orcid: 0000-0003-2848-6949Affiliations:
- Dresden University of Technology, BIOTEC, Germany
- City University London, Department of Computing, UK
- University of Hannover, Institute for Knowledge-Based Systems
According to our database1,
Michael Schroeder
authored at least 139 papers
between 1995 and 2023.
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Bibliography
2023
BMC Bioinform., December, 2023
2022
Decomposing compounds enables reconstruction of interaction fingerprints for structure-based drug screening.
J. Cheminformatics, 2022
NetRank Recovers Known Cancer Hallmark Genes as Universal Biomarker Signature for Cancer Outcome Prediction.
Frontiers Bioinform., 2022
Database J. Biol. Databases Curation, 2022
Measuring Group Separability in Geometrical Space for Evaluation of Pattern Recognition and Dimension Reduction Algorithms.
IEEE Access, 2022
2021
PLIP 2021: expanding the scope of the protein-ligand interaction profiler to DNA and RNA.
Nucleic Acids Res., 2021
Toward an Understanding of Pan-Assay Interference Compounds and Promiscuity: A Structural Perspective on Binding Modes.
J. Chem. Inf. Model., 2021
2019
UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands.
Nucleic Acids Res., 2019
2018
Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases.
PLoS Comput. Biol., 2018
Pioneering topological methods for network-based drug-target prediction by exploiting a brain-network self-organization theory.
Briefings Bioinform., 2018
2017
MAGPIE: Simplifying access and execution of computational models in the life sciences.
PLoS Comput. Biol., 2017
2015
An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition.
BMC Bioinform., 2015
J. Biomed. Semant., 2015
2014
Proceedings of the First International Workshop on Patent Mining and Its Applications (IPaMin 2014) co-located with Konvens 2014, 2014
Proceedings of the Trusted Cloud Computing, 2014
Proceedings of the Trusted Cloud Computing, 2014
2013
Automated Patent Categorization and Guided Patent Search using IPC as Inspired by MeSH and PubMed.
J. Biomed. Semant., 2013
Proceedings of the 10th International Workshop on OWL: Experiences and Directions (OWLED 2013) co-located with 10th Extended Semantic Web Conference (ESWC 2013), 2013
Proceedings of the first Workshop on Bio-Medical Semantic Indexing and Question Answering, 2013
2012
Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes.
PLoS Comput. Biol., 2012
A Maximum-Entropy approach for accurate document annotation in the biomedical domain.
J. Biomed. Semant., 2012
Bioinform., 2012
Semantic Interoperability Between Clinical Research and Healthcare: The PONTE Approach.
Proceedings of the Semantic Web: ESWC 2012 Satellite Events, 2012
BioASQ: A Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering.
Proceedings of the Information Retrieval and Knowledge Discovery in Biomedical Text, 2012
2011
BMC Syst. Biol., 2011
Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction.
Bioinform., 2011
Old friends in new guise: repositioning of known drugs with structural bioinformatics.
Briefings Bioinform., 2011
Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011
Semantic search for the life sciences.
Proceedings of the Information und Wissen: global, 2011
Proceedings of the Research and Advanced Technology for Digital Libraries, 2011
2010
SuperCYP: a comprehensive database on Cytochrome P450 enzymes including a tool for analysis of CYP-drug interactions.
Nucleic Acids Res., 2010
Nucleic Acids Res., 2010
Structural fragment clustering reveals novel structural and functional motifs in <i>alpha</i>-helical transmembrane proteins.
BMC Bioinform., 2010
2009
Proceedings of the Semantic Techniques for the Web, The REWERSE Perspective, 2009
Improved mutation tagging with gene identifiers applied to membrane protein stability prediction.
BMC Bioinform., 2009
BMC Bioinform., 2009
Triangle network motifs predict complexes by complementing high-error interactomes with structural information.
BMC Bioinform., 2009
Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy.
BMC Bioinform., 2009
Briefings Bioinform., 2009
Mining for Patterns of Semantic Link Usage: Do Domain Users Actually Like Semantic Browsing?
Proceedings of the 2009 IEEE/WIC/ACM International Conference on Web Intelligence and International Conference on Intelligent Agent Technology, 2009
Proceedings of the German Conference on Bioinformatics 2009, 2009
2008
Proceedings of the Anatomy Ontologies for Bioinformatics, Principles and Practice, 2008
Word Sense Disambiguation in biomedical ontologies with term co-occurrence analysis and document clustering.
Int. J. Data Min. Bioinform., 2008
BMC Bioinform., 2008
BMC Bioinform., 2008
Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?
Briefings Bioinform., 2008
Mutation tagging with gene identifiers applied to membrane protein stability prediction.
Proceedings of the ECCB 2008 Workshop: Annotation, 2008
Proceedings of the ECCB'08 Proceedings, 2008
Proceedings of the Ontologies and Text Mining for Life Sciences: Current Status and Future Perspectives, 24.03., 2008
Ontology learning with text mining: Two use cases in lipoprotein metabolism and toxicology.
Proceedings of the Ontologies and Text Mining for Life Sciences: Current Status and Future Perspectives, 24.03., 2008
2007
BMC Bioinform., 2007
A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy.
Bioinform., 2007
Bioinform., 2007
Briefings Bioinform., 2007
Structural templates predict novel protein interactions and targets from pancreas tumour gene expression data.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
Proceedings of the German Conference on Bioinformatics, 2007
Proceedings of the Advances in Conceptual Modeling - Foundations and Applications, 2007
Proceedings of the Towards Interoperability of Biomedical Ontologies, 27.03. - 30.03.2007, 2007
2006
PLoS Comput. Biol., 2006
Nucleic Acids Res., 2006
SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.
BMC Bioinform., 2006
Bioinform., 2006
Proceedings of the Winter Simulation Conference WSC 2006, 2006
Proceedings of the Reasoning Web, 2006
Sealife: A Semantic Grid Browser for the Life Sciences Applied to the Study of Infectious Diseases.
Proceedings of the Challenges and Opportunities of HealthGrids, 2006
A Novel, Comprehensive Method to Detect and Predict Proteinprotein Interactions Applied to the Study of Vesicular Trafficking.
Proceedings of the German Conference on Bioinformatics GCB 2006, 19.09. 2006, 2006
Proceedings of the German Conference on Bioinformatics GCB 2006, 19.09. 2006, 2006
Proceedings of the Euro-Par 2006, Parallel Processing, 12th International Euro-Par Conference, Dresden, Germany, August 28, 2006
Prova: Rule-Based Java Scripting for Distributed Web Applications: A Case Study in Bioinformatics.
Proceedings of the Current Trends in Database Technology - EDBT 2006, 2006
Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interactions.
Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006
A Structure-Based Analysis of Single Molecule Force Spectroscopy (SMFS) Data for Bacteriorhodopsin and Four Mutants.
Proceedings of the Computational Life Sciences II, 2006
2005
A Parameterised Hierarchy of Argumentation Semantics for Extended Logic Programming and its Application to the Well-founded Semantics.
Theory Pract. Log. Program., 2005
Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map).
Bioinform., 2005
Using residue propensities and tightness of fit to improve rigid-body protein-docking.
Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, 2005
Structural Protein Interactions Predict Kinase-Inhibitor Interactions in Upregulated Pancreas Tumour Genes Expression Data.
Proceedings of the Computational Life Sciences, First International Symposium, 2005
2004
Integrating Gene Expression Data, Protein Interaction Data, and Ontology-Based Literature Searches.
Proceedings of the Artificial Intelligence Methods And Tools For Systems Biology, 2004
Concurr. Pract. Exp., 2004
Bioinform., 2004
Proceedings of the SOFSEM 2004: Theory and Practice of Computer Science, 2004
Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004
Proceedings of the Data Integration in the Life Sciences, First International Workshop, 2004
2003
Visualisation and graph-theoretic analysis of a large-scale protein structural interactome.
BMC Bioinform., 2003
Structural Protein Interactions: From Months to Minutes.
Proceedings of the Parallel Computing: Software Technology, 2003
Market-based Resource Allocation for Grid Computing: A Model and Simulation.
Proceedings of the International Middleware Conference, 2003
Fast and efficient computation of domain-domaininteractions from known protein structures in the PDB.
Proceedings of the German Conference on Bioinformatics, 2003
Proceedings of the Engineering Societies in the Agents World IV, 2003
Interaction Monitoring and Termination Detection for Agent Societies: Preliminary Results.
Proceedings of the Engineering Societies in the Agents World IV, 2003
2002
Proceedings of the Computational Logic in Multi-Agent Systems, 2002
Consistent Integration of Non-reliable Heterogeneous Information Resources Applied to the Annotation of Transmembrane Proteins.
Comput. Chem., 2002
Appl. Intell., 2002
Well-founded argumentation semantics for extended logic programming.
Proceedings of the 9th International Workshop on Non-Monotonic Reasoning (NMR 2002), 2002
Notions of Attack and Justified Arguments for Extended Logic Programs.
Proceedings of the 15th European Conference on Artificial Intelligence, 2002
Proceedings of the First International Joint Conference on Autonomous Agents & Multiagent Systems, 2002
Proceedings of the First International Joint Conference on Autonomous Agents & Multiagent Systems, 2002
2001
Inf. Sci., 2001
A Quantitative and Qualitative Comparison of Distributed Information Processing Using Mobile Agents Realised in RMI and Voyager.
Int. J. Softw. Eng. Knowl. Eng., 2001
Proceedings of the Multi-Agent-Systems and Applications II, 2001
Proceedings of the Fifth International Conference on Autonomous Agents, 2001
Proceedings of the Fifth International Conference on Autonomous Agents, 2001
2000
Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data.
Proceedings of the Computational Biology, 2000
Proceedings of the 1st IEEE International Symposium on Bioinformatics and Biomedical Engineering, 2000
Proceedings of the Agent-Mediated Electronic Commerce III, 2000
Proceedings of the Fourth International Conference on Autonomous Agents, 2000
Proceedings of the Infrastructure for Agents, 2000
1999
Proceedings of the MultiAgent System Engineering, 1999
Proceedings of the International Conference on Information Visualisation, 1999
Proceedings of the 11th IEEE International Conference on Tools with Artificial Intelligence, 1999
Facilitating context-sensitive queries: A tool to rephrase SWISS-PROT.
Proceedings of the German Conference on Bioinformatics, 1999
Verification of Business Processes for a Correspondence Handling Center Using CCS.
Proceedings of the Validation and Verification of Knowledge Based Systems, 1999
Using Singular Value Decomposition to Visualise Relations Within Multi-Agent Systems.
Proceedings of the Third Annual Conference on Autonomous Agents, 1999
1998
Proceedings of the Second International Conference on Autonomous Agents, 1998
1997
Proceedings of the 6th Workshop on Enabling Technologies (WET-ICE '97), 1997
Proceedings of the Formal Models of Agents, 1997
Proceedings of the Logic Programming and Nonmonotonic Reasoning, 1997
Proceedings of the Progress in Artificial Intelligence, 1997
Proceedings of the First International Conference on Autonomous Agents, 1997
1996
Proceedings of the Logics in Artificial Intelligence, European Workshop, 1996
Proceedings of the Eigth International Conference on Tools with Artificial Intelligence, 1996
1995
A Formal Framework for Representing Diagnosis Strategies in Model-Based Diagnosis Systems.
Proceedings of the Fourteenth International Joint Conference on Artificial Intelligence, 1995