Blaz Zupan

According to our database1, Blaz Zupan authored at least 100 papers between 1995 and 2020.

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Bibliography

2020
RICERCANDO: Data mining toolkit for mobile broadband measurements.
Comput. Networks, 2020

2019
scOrange - a tool for hands-on training of concepts from single-cell data analytics.
Bioinform., 2019

Embedding to Reference t-SNE Space Addresses Batch Effects in Single-Cell Classification.
Proceedings of the Discovery Science - 22nd International Conference, 2019

2017
dictyExpress: a web-based platform for sequence data management and analytics in <i>Dictyostelium</i> and beyond.
BMC Bioinform., 2017

Scalable non-negative matrix tri-factorization.
BioData Min., 2017

2016
Jumping across biomedical contexts using compressive data fusion.
Bioinform., 2016

Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins.
Bioinform., 2016

Collective Pairwise Classification for Multi-Way Analysis of Disease and Drug Data.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

2015
Concurrent software architectures for exploratory data analysis.
Wiley Interdiscip. Rev. Data Min. Knowl. Discov., 2015

Integrative Clustering by Nonnegative Matrix Factorization Can Reveal Coherent Functional Groups From Gene Profile Data.
IEEE J. Biomed. Health Informatics, 2015

Gene Prioritization by Compressive Data Fusion and Chaining.
PLoS Comput. Biol., 2015

Data Fusion by Matrix Factorization.
IEEE Trans. Pattern Anal. Mach. Intell., 2015

Data Imputation in Epistatic MAPs by Network-Guided Matrix Completion.
J. Comput. Biol., 2015

Gene network inference by fusing data from diverse distributions.
Bioinform., 2015

2014
Assessment of Machine Learning Reliability Methods for Quantifying the Applicability Domain of QSAR Regression Models.
J. Chem. Inf. Model., 2014

Heterogeneous computing architecture for fast detection of SNP-SNP interactions.
BMC Bioinform., 2014

Gene network inference by probabilistic scoring of relationships from a factorized model of interactions.
Bioinform., 2014

Imputation of Quantitative Genetic Interactions in Epistatic MAPs by Interaction Propagation Matrix Completion.
Proceedings of the Research in Computational Molecular Biology, 2014

Matrix Factorization-Based Data Fusion for Gene Function Prediction in Baker's Yeast and Slime Mold.
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

2013
Orange: data mining toolbox in python.
J. Mach. Learn. Res., 2013

Orange: Data Mining Fruitful and Fun - A Historical Perspective.
Informatica (Slovenia), 2013

DEX Methodology: Three Decades of Qualitative Multi-Attribute Modeling.
Informatica (Slovenia), 2013

Interest Propagation for Knowledge Extraction and Representation.
Proceedings of the Data and Knowledge for Medical Decision Support, 2013

Extracting Gene Regulation Networks Using Linear-Chain Conditional Random Fields and Rules.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

2012
NIMFA: A Python Library for Nonnegative Matrix Factorization.
J. Mach. Learn. Res., 2012

Team ULjubljana's Solution to the JRS 2012 Data Mining Competition.
Proceedings of the Rough Sets and Current Trends in Computing, 2012

2011
SNPsyn: detection and exploration of SNP-SNP interactions.
Nucleic Acids Res., 2011

Subgroup discovery in data sets with multi-dimensional responses.
Intell. Data Anal., 2011

Stage prediction of embryonic stem cell differentiation from genome-wide expression data.
Bioinform., 2011

Similarity of Transcription Profiles for Genes in Gene Sets.
Proceedings of the Adaptive and Natural Computing Algorithms, 2011

Ranking and 1-Dimensional Projection of Cell Development Transcription Profiles.
Proceedings of the Artificial Intelligence in Medicine, 2011

A Data Mining Library for miRNA Annotation and Analysis.
Proceedings of the Artificial Intelligence in Medicine, 2011

2010
Data Mining in Medicine.
Proceedings of the Data Mining and Knowledge Discovery Handbook, 2nd ed., 2010

A Subgroup Discovery Approach for Relating Chemical Structure and Phenotype Data in Chemical Genomics.
Proceedings of the third International Workshop on Machine Learning in Systems Biology, 2010

On utility of gene set signatures in gene expression-based cancer class prediction.
Proceedings of the third International Workshop on Machine Learning in Systems Biology, 2010

FragViz: visualization of fragmented networks.
BMC Bioinform., 2010

New components of the <i>Dictyostelium </i>PKA pathway revealed by Bayesian analysis of expression data.
BMC Bioinform., 2010

Text Mining approaches for Automated Literature Knowledge Extraction and Representation.
Proceedings of the MEDINFO 2010, 2010

2009
Data-Driven Revision of Decision Models.
Proceedings of the Encyclopedia of Data Warehousing and Mining, Second Edition (4 Volumes), 2009

dictyBase - a <i>Dictyostelium</i> bioinformatics resource update.
Nucleic Acids Res., 2009

Textual features for corpus visualization using correspondence analysis.
Intell. Data Anal., 2009

dictyExpress: a <i>Dictyostelium discoideum </i>gene expression database with an explorative data analysis web-based interface.
BMC Bioinform., 2009

Subgroup Discovery in Data Sets with Multi-dimensional Responses: A Method and a Case Study in Traumatology.
Proceedings of the Artificial Intelligence in Medicine, 2009

On Quality of Different Annotation Sources for Gene Expression Analysis.
Proceedings of the Artificial Intelligence in Medicine, 2009

2008
Predictive data mining in clinical medicine: Current issues and guidelines.
Int. J. Medical Informatics, 2008

Modelling impacts of cropping systems: Demands and solutions for DEX methodology.
Eur. J. Oper. Res., 2008

2007
FreeViz - An intelligent multivariate visualization approach to explorative analysis of biomedical data.
J. Biomed. Informatics, 2007

Towards knowledge-based gene expression data mining.
J. Biomed. Informatics, 2007

Polyketide synthase genes and the natural products potential of <i>Dictyostelium discoideum</i>.
Bioinform., 2007

Visualization-based cancer microarray data classification analysis.
Bioinform., 2007

Discovery of Genetic Networks Through Abduction and Qualitative Simulation.
Proceedings of the Computational Discovery of Scientific Knowledge, 2007

2006
Spam Filtering Using Statistical Data Compression Models.
J. Mach. Learn. Res., 2006

proDEX - A DSS tool for environmental decision-making.
Environ. Model. Softw., 2006

VizRank: Data Visualization Guided by Machine Learning.
Data Min. Knowl. Discov., 2006

Knowledge-based data analysis and interpretation.
Artif. Intell. Medicine, 2006

Towards Practical PPM Spam Filtering: Experiments for the TREC 2006 Spam Track.
Proceedings of the Fifteenth Text REtrieval Conference, 2006

2005
GenePath: from mutations to genetic networks and back.
Nucleic Acids Res., 2005

TA-clustering: Cluster analysis of gene expression profiles through Temporal Abstractions.
Int. J. Medical Informatics, 2005

VizRank: finding informative data projections in functional genomics by machine learning.
Bioinform., 2005

Microarray data mining with visual programming.
Bioinform., 2005

Simple and effective visual models for gene expression cancer diagnostics.
Proceedings of the Eleventh ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2005

Nomograms for visualizing support vector machines.
Proceedings of the Eleventh ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2005

Conquering the Curse of Dimensionality in Gene Expression Cancer Diagnosis: Tough Problem, Simple Models.
Proceedings of the Artificial Intelligence in Medicine, 2005

Data Mining in Medicine.
Proceedings of the Data Mining and Knowledge Discovery Handbook., 2005

2004
A function-decomposition method for development of hierarchical multi-attribute decision models.
Decis. Support Syst., 2004

Nomograms for Visualization of Naive Bayesian Classifier.
Proceedings of the Knowledge Discovery in Databases: PKDD 2004, 2004

Orange: From Experimental Machine Learning to Interactive Data Mining.
Proceedings of the Knowledge Discovery in Databases: PKDD 2004, 2004

Clustering gene expression data with Temporal Abstractions.
Proceedings of the MEDINFO 2004, 2004

2003
GenePath: a system for automated construction of genetic networks from mutant data.
Bioinform., 2003

GenePath: a system for inference of genetic networks and proposal of genetic experiments.
Artif. Intell. Medicine, 2003

Attribute Interactions in Medical Data Analysis.
Proceedings of the Artificial Intelligence in Medicine, 2003

2002
Construction and application of hierarchical socioeconomic decision models.
Informatica (Slovenia), 2002

Prognostic Model for Terminally Ill Cancer Patients on Laboratory Data.
Proceedings of the AMIA 2002, 2002

2001
Feature mining and predictive model construction from severe trauma patient's data.
Int. J. Medical Informatics, 2001

Decisions at Hand: A Decision Support System on Handhelds.
Proceedings of the MEDINFO 2001, 2001

GenePath: A Computer Program for Genetic Pathway Discovery from Mutant Data.
Proceedings of the MEDINFO 2001, 2001

A Sixth International Workshop on Intelligent Data Analysis in Medicine and Pharmacology (IDAMAP-2001).
Proceedings of the MEDINFO 2001, 2001

Web-Enabled Knowledge-Based Analysis of Genetic Data.
Proceedings of the Medical Data Analysis, Second International Symposium, 2001

Abductive Inference of Genetic Networks.
Proceedings of the Artificial Intelligence Medicine, 2001

Function Decomposition in Machine Learning.
Proceedings of the Machine Learning and Its Applications, Advanced Lectures, 2001

Transformation of attribute space by function decomposition.
Proceedings of the Data Fusion and Perception, 2001

2000
Applications of qualitative multi-attribute decision models in health care.
Int. J. Medical Informatics, 2000

Machine learning for survival analysis: a case study on recurrence of prostate cancer.
Artif. Intell. Medicine, 2000

Induction of Concept Hierarchies from Noisy Data.
Proceedings of the Seventeenth International Conference on Machine Learning (ICML 2000), Stanford University, Stanford, CA, USA, June 29, 2000

1999
Learning by Discovering Concept Hierarchies.
Artif. Intell., 1999

Slovenian national health insurance card: The next step.
Proceedings of the Medical Informatics Europe '99, Proceedings, Ljubljana, Slovenia, 1999

Naive Bayesian-Based Nomogram for Prediction of Prostate Cancer Recurrence.
Proceedings of the Medical Informatics Europe '99, Proceedings, Ljubljana, Slovenia, 1999

Hierarchical Multi-Attribute Decision Models and Their Application in Health Care.
Proceedings of the Medical Informatics Europe '99, Proceedings, Ljubljana, Slovenia, 1999

Rule Evaluation Measures: A Unifying View.
Proceedings of the Inductive Logic Programming, 9th International Workshop, 1999

1998
Optimization of Rule-Based Systems Using State Space Graphs.
IEEE Trans. Knowl. Data Eng., 1998

Experimental Evaluation of Three Partition Selection Criteria for Decision Table Decomposition.
Informatica (Slovenia), 1998

Relating clinical and neurophysiological assessment of spasticity by machine learning.
Int. J. Medical Informatics, 1998

Feature Transformation by Function Decomposition.
IEEE Intell. Syst., 1998

Acquiring background knowledge for machine learning using function decomposition: a case study in rheumatology.
Artif. Intell. Medicine, 1998

Intelligent Data Analysis for Medical Diagnosis: Using Machine Learning and Temporal Abstraction.
AI Commun., 1998

1997
A Dataset Decomposition Approach to Data Mining and Machine Discovery.
Proceedings of the Third International Conference on Knowledge Discovery and Data Mining (KDD-97), 1997

Machine Learning by Function Decomposition.
Proceedings of the Fourteenth International Conference on Machine Learning (ICML 1997), 1997

Constructing Intermediate Concepts by Decomposition of Real Functions.
Proceedings of the Machine Learning: ECML-97, 1997

Acquiring and Validating Background Knowledge for Machine Learning Using Function Decomposition.
Proceedings of the Artificial Intelligence Medicine, 1997

1995
A Simulation and Optimization Environment for Models in Computational Neurobiology.
Proceedings of the EUROSIM'96, 1995


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