Warren A. Kibbe

According to our database, Warren A. Kibbe authored at least 28 papers between 2001 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C).

Jason A. Thomas, Randi E. Foraker, Noa Zamstein, Jon D. Morrow, Philip R. O. Payne, Adam B. Wilcox, Melissa A. Haendel, Christopher G. Chute, Kenneth R. Gersing, Anita Walden, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Hongfang Liu, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Justin Starren, Christine Suver, Chunlei Wu, Davera Gabriel, Stephanie S. Hong, Kristin Kostka, Harold P. Lehmann, Richard A. Moffitt, Michele Morris, Matvey B. Palchuk, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Mark M. Bissell, Marshall Clark, Andrew T. Girvin, Adam M. Lee, Robert T. Miller, Kellie M. Walters, Yooree Chae, Connor Cook, Alexandra Dest, Racquel R. Dietz, Thomas Dillon, Patricia A. Francis, Rafael Fuentes, Alexis Graves, Andrew J. Neumann, Shawn T. O'Neil, Usman Sheikh, Andréa M. Volz, Elizabeth Zampino, Christopher P. Austin, Samuel Bozzette, Mariam Deacy, Nicole Garbarini, Michael G. Kurilla, Sam G. Michael, Joni L. Rutter, Meredith Temple-O'Connor, Katie Rebecca Bradwell, Amin Manna, Nabeel Qureshi, Mary Morrison Saltz, Julie A. McMurry, Carolyn T. Bramante, Jeremy Richard Harper, Wenndy Hernandez, Farrukh M. Koraishy, Federico Mariona, Saidulu Mattapally, Amit Saha, Satyanarayana Vedula, Yujuan Fu, Nisha Mathews, Ofer Mendelevitch

J. Am. Medical Informatics Assoc., 2022

Standardizing, harmonizing, and protecting data collection to broaden the impact of COVID-19 research: the rapid acceleration of diagnostics-underserved populations (RADx-UP) initiative.

Gabriel A. Carrillo, Michael Cohen-Wolkowiez, Emily M. D'agostino, Keith Marsolo, Lisa M. Wruck, Laura Johnson, James Topping, Al Richmond, Giselle Corbie, Warren A. Kibbe

J. Am. Medical Informatics Assoc., 2022

2021

Reply: Matters Arising 'Investigating sources of inaccuracy in wearable optical heart rate sensors'.

Brinnae Bent, Oana M. Enache, Benjamin Goldstein, Warren A. Kibbe, Jessilyn Dunn

npj Digit. Medicine, 2021

The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.

Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Philip R. O. Payne, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Christine Suver, John Wilbanks, Adam B. Wilcox, Andrew E. Williams, Chunlei Wu, Clair Blacketer, Robert L. Bradford, James J. Cimino, Marshall Clark, Evan W. Colmenares, Patricia A. Francis, Davera Gabriel, Alexis Graves, Raju Hemadri, Stephanie S. Hong, George Hripcsak, Dazhi Jiao, Jeffrey G. Klann, Kristin Kostka, Adam M. Lee, Harold P. Lehmann, Lora Lingrey, Robert T. Miller, Michele Morris, Shawn N. Murphy, Karthik Natarajan, Matvey B. Palchuk, Usman Sheikh, Harold Solbrig, Shyam Visweswaran, Anita Walden, Kellie M. Walters, Griffin M. Weber, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Andrew T. Girvin, Amin Manna, Nabeel Qureshi, Michael G. Kurilla, Sam G. Michael, Lili M. Portilla, Joni L. Rutter, Christopher P. Austin, Ken R. Gersing

J. Am. Medical Informatics Assoc., 2021

2020

Investigating sources of inaccuracy in wearable optical heart rate sensors.

Brinnae Bent, Benjamin Goldstein, Warren A. Kibbe, Jessilyn Dunn

npj Digit. Medicine, 2020

2017

The National Cancer Institute (NCI) Informatics Technology for Cancer Research Program (ITCR).

Juli D. Klemm, Mervi Heiskanen, Jerry Li, David Miller, Christos Patriotis, George Redmond, Miguel Ossandon, Jacek Capala, Leah E. Mechanic, Yantian Zhang, Rao Divi, Tony Dickherber, Warren A. Kibbe

Proceedings of the Summit on Clinical Research Informatics, 2017

2015

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.

Warren A. Kibbe, Cesar Arze, Victor Felix, Elvira Mitraka, Evan Bolton, Gang Fu, Christopher J. Mungall, Janos X. Binder, James Malone, Drashtti Vasant, Helen E. Parkinson, Lynn M. Schriml

Nucleic Acids Res., 2015

Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis.

Tsung-Jung Wu, Lynn M. Schriml, Qingrong Chen, Maureen Colbert, Daniel J. Crichton, Richard P. Finney, Ying Hu, Warren A. Kibbe, Heather Kincaid, Daoud M. Meerzaman, Elvira Mitraka, Yang Pan, Krista Smith, Sudhir Srivastava, Sari Ward, Cheng Yan, Raja Mazumder

Database J. Biol. Databases Curation, 2015

2013

The disease and gene annotations (DGA): an annotation resource for human disease.

Kai Peng, Wei Xu, Jianyong Zheng, Kegui Huang, Huisong Wang, Jiansong Tong, Zhifeng Lin, Jun Liu, Wenqing Cheng, Dong Fu, Pan Du, Warren A. Kibbe, Simon M. Lin, Tian Xia

Nucleic Acids Res., 2013

dictyBase 2013: integrating multiple Dictyostelid species.

Siddhartha Basu, Petra Fey, Yogesh Pandit, Robert J. Dodson, Warren A. Kibbe, Rex L. Chisholm

Nucleic Acids Res., 2013

2012

Disease Ontology: a backbone for disease semantic integration.

Lynn M. Schriml, Cesar Arze, Suvarna Nadendla, Yu-Wei Wayne Chang, Mark Mazaitis, Victor Felix, Gang Feng, Warren A. Kibbe

Nucleic Acids Res., 2012

Text data extraction for a prospective, research-focused data mart: implementation and validation.

Monique Hinchcliff, Eric M. Just, Sofia Podlusky, John Varga, Rowland W. Chang, Warren A. Kibbe

BMC Medical Informatics Decis. Mak., 2012

Integrating Research Recruitment into a Clinical Patient Portal.

Luke V. Rasmussen, David Were, Jeff Lunt, Steve Lee, Carl Christensen, Warren A. Kibbe, Justin Starren

Proceedings of the AMIA 2012, 2012

GI Diaries©: A model iOS application for the collection of patient reported outcomes in clinical care.

Andrew Gawron, Mark Wimbiscus Yoon, Laura Wimbiscus Yoon, Kristina Verkaik, Meghan Thompson, Abel N. Kho, Warren A. Kibbe, John E. Pandolfino

Proceedings of the AMIA 2012, 2012

2011

dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa.

Pascale Gaudet, Petra Fey, Siddhartha Basu, Yulia A. Bushmanova, Robert J. Dodson, Kerry A. Sheppard, Eric M. Just, Warren A. Kibbe, Rex L. Chisholm

Nucleic Acids Res., 2011

Direct2Experts: a pilot national network to demonstrate interoperability among research-networking platforms.

Griffin M. Weber, William K. Barnett, Mike Conlon, David Eichmann, Warren A. Kibbe, Holly J. Falk-Krzesinski, Michael Halaas, Layne Johnson, Eric Meeks, Donald Mitchell, Titus Schleyer, Sarah C. Stallings, Michael Warden, Maninder Kahlon

J. Am. Medical Informatics Assoc., 2011

2010

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.

Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A. Kibbe, Lifang Hou, Simon M. Lin

BMC Bioinform., 2010

2009

dictyBase - a <i>Dictyostelium</i> bioinformatics resource update.

Petra Fey, Pascale Gaudet, Tomaz Curk, Blaz Zupan, Eric M. Just, Siddhartha Basu, Sohel N. Merchant, Yulia A. Bushmanova, Gad Shaulsky, Warren A. Kibbe, Rex L. Chisholm

Nucleic Acids Res., 2009

From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations.

Pan Du, Gang Feng, Jared Flatow, Jie Song, Michelle Holko, Warren A. Kibbe, Simon M. Lin

Bioinform., 2009

2008

A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays.

Chia-Ju Lee, Dong Fu, Pan Du, Hongmei Jiang, Simon M. Lin, Warren A. Kibbe

Int. J. Comput. Biol. Drug Des., 2008

<i>lumi</i>: a pipeline for processing Illumina microarray.

Pan Du, Warren A. Kibbe, Simon M. Lin

Bioinform., 2008

2007

OligoCalc: an online oligonucleotide properties calculator.

Warren A. Kibbe

Nucleic Acids Res., 2007

Xanthusbase: adapting wikipedia principles to a model organism database.

Bradley I. Arshinoff, Garret Suen, Eric M. Just, Sohel M. Merchant, Warren A. Kibbe, Rex L. Chisholm, Roy D. Welch

Nucleic Acids Res., 2007

Application of Wavelet Transform to the MS-based Proteomics Data Preprocessing.

Pan Du, Simon M. Lin, Warren A. Kibbe, Haihui Wang

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

dictyBase, the model organism database for <i>Dictyostelium discoideum</i>.

Rex L. Chisholm, Pascale Gaudet, Eric M. Just, Karen E. Pilcher, Petra Fey, Sohel N. Merchant, Warren A. Kibbe

Nucleic Acids Res., 2006

Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching.

Pan Du, Warren A. Kibbe, Simon M. Lin

Bioinform., 2006

2004

dictyBase: a new Dictyostelium discoideum genome database.

Lisa Kreppel, Petra Fey, Pascale Gaudet, Eric M. Just, Warren A. Kibbe, Rex L. Chisholm, Alan R. Kimmel

Nucleic Acids Res., 2004

2001

An assessment of cancer clinical trials vocabulary and IT infrastructure in the U.S.

K. Gwaltney, Christopher G. Chute, Douglas Hageman, Warren A. Kibbe, Kathleen A. McCormick, Dianne M. Reeves, Lawrence W. Wright

Proceedings of the AMIA 2001, 2001