Brent S. Pedersen

According to our database, Brent S. Pedersen authored at least 18 papers between 2011 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

Vcfexpress: flexible, rapid user-expressions to filter and format VCFs.

Brent S. Pedersen, Aaron R. Quinlan

Bioinform., 2025

2022

A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar.

Erik Garrison, Zev N. Kronenberg, Eric T. Dawson, Brent S. Pedersen, Pjotr Prins

PLoS Comput. Biol., 2022

Author Correction: Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools.

Hao Hou, Brent S. Pedersen, Aaron R. Quinlan

Nat. Comput. Sci., 2022

Combining genetic constraint with predictions of alternative splicing to prioritize deleterious splicing in rare disease studies.

Michael J. Cormier, Brent S. Pedersen, Pinar Bayrak-Toydemir, Aaron R. Quinlan

BMC Bioinform., 2022

2021

Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools.

Hao Hou, Brent S. Pedersen, Aaron R. Quinlan

Nat. Comput. Sci., 2021

Unfazed: parent-of-origin detection for large and small de novo variants.

Jonathan R. Belyeu, Thomas A. Sasani, Brent S. Pedersen, Aaron R. Quinlan

Bioinform., 2021

2018

hts-nim: scripting high-performance genomic analyses.

Brent S. Pedersen, Aaron R. Quinlan

Bioinform., 2018

Mosdepth: quick coverage calculation for genomes and exomes.

Brent S. Pedersen, Aaron R. Quinlan

Bioinform., 2018

2017

bíogo/hts: high throughput sequence handling for the Go language.

R. Daniel Kortschak, Brent S. Pedersen, David L. Adelson

J. Open Source Softw., 2017

cyvcf2: fast, flexible variant analysis with Python.

Brent S. Pedersen, Aaron R. Quinlan

Bioinform., 2017

2015

Efficient "pythonic" access to FASTA files using pyfaidx.

Matthew D. Shirley, Zhaorong Ma, Brent S. Pedersen, Sarah J. Wheelan

PeerJ Prepr., 2015

2014

The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment.

Subhajyoti De, Brent S. Pedersen, Katerina J. Kechris

Briefings Bioinform., 2014

2013

CruzDB: software for annotation of genomic intervals with UCSC genome-browser database.

Brent S. Pedersen, Ivana V. Yang, Subhajyoti De

Bioinform., 2013

2012

Comb-p: software for combining, analyzing, grouping and correcting spatially correlated <i>P</i>-values.

Brent S. Pedersen, David A. Schwartz, Ivana V. Yang, Katerina J. Kechris

Bioinform., 2012

2011

BioStar: An Online Question & Answer Resource for the Bioinformatics Community.

Laurence D. Parnell, Pierre Lindenbaum, Khader Shameer, Giovanni Marco Dall'Olio, Daniel C. Swan, Lars Juhl Jensen, Simon J. Cockell, Brent S. Pedersen, Mary E. Mangan, Christopher A. Miller, István Albert

PLoS Comput. Biol., 2011

Screening synteny blocks in pairwise genome comparisons through integer programming.

Haibao Tang, Eric Lyons, Brent S. Pedersen, James C. Schnable, Andrew H. Paterson, Michael Freeling

BMC Bioinform., 2011

Gobe: an interactive, web-based tool for comparative genomic visualization.

Brent S. Pedersen, Haibao Tang, Michael Freeling

Bioinform., 2011

Pybedtools: a flexible Python library for manipulating genomic datasets and annotations.

Ryan K. Dale, Brent S. Pedersen, Aaron R. Quinlan

Bioinform., 2011