Lars Juhl Jensen
Orcid: 0000-0001-7885-715X
According to our database1,
Lars Juhl Jensen
authored at least 81 papers
between 2000 and 2024.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on twitter.com
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on orcid.org
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on github.com
On csauthors.net:
Bibliography
2024
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data.
Bioinform., February, 2024
2023
The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest.
Nucleic Acids Res., January, 2023
Nucleic Acids Res., January, 2023
Nucleic Acids Res., January, 2023
2022
Identifying the genes impacted by cell proliferation in proteomics and transcriptomics studies.
PLoS Comput. Biol., October, 2022
A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research.
J. Chem. Inf. Model., 2022
Diseases 2.0: a weekly updated database of disease-gene associations from text mining and data integration.
Database J. Biol. Databases Curation, 2022
2021
The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.
Nucleic Acids Res., 2021
Nucleic Acids Res., 2021
2020
PLoS Comput. Biol., 2020
F1000Research, 2020
CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision.
Bioinform., 2020
Using National Electronic Health Care Registries to Analyse and Predict Alcoholic Liver Disease.
Proceedings of the Extraction et Gestion des Connaissances, 2020
2019
ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins.
PLoS Comput. Biol., 2019
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Nucleic Acids Res., 2019
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.
Nucleic Acids Res., 2019
Design, implementation, and operation of a rapid, robust named entity recognition web service.
J. Cheminformatics, 2019
Inferring disease-associated long non-coding RNAs using genome-wide tissue expression profiles.
Bioinform., 2019
2018
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts.
PLoS Comput. Biol., 2018
Nucleic Acids Res., 2018
BMC Bioinform., 2018
Database J. Biol. Databases Curation, 2018
2017
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Nucleic Acids Res., 2017
Nucleic Acids Res., 2017
J. Biomed. Semant., 2017
Database J. Biol. Databases Curation, 2017
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017
2016
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data.
Nucleic Acids Res., 2016
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.
Nucleic Acids Res., 2016
SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles.
Bioinform., 2016
Database J. Biol. Databases Curation, 2016
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.
Database J. Biol. Databases Curation, 2016
One Tagger, Many Uses: Illustrating the Power of Ontologies in Dictionary-based Named Entity Recognition.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
A dictionary- and rule-based system for identification of bacteria and habitats in text.
Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, 2016
2015
Nucleic Acids Res., 2015
Nucleic Acids Res., 2015
ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life.
Bioinform., 2015
Proceedings of the 53rd Annual Meeting of the Association for Computational Linguistics and the 7th International Joint Conference on Natural Language Processing of the Asian Federation of Natural Language Processing, 2015
2014
Nucleic Acids Res., 2014
Nucleic Acids Res., 2014
COMPARTMENTS: unification and visualization of protein subcellular localization evidence.
Database J. Biol. Databases Curation, 2014
2013
STRING v9.1: protein-protein interaction networks, with increased coverage and integration.
Nucleic Acids Res., 2013
Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text.
J. Am. Medical Informatics Assoc., 2013
OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction.
Proceedings of the 13th IEEE International Conference on BioInformatics and BioEngineering, 2013
2012
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.
Nucleic Acids Res., 2012
Nucleic Acids Res., 2012
Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs.
BMC Syst. Biol., 2012
2011
Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts.
PLoS Comput. Biol., 2011
PLoS Comput. Biol., 2011
PLoS Comput. Biol., 2011
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.
Nucleic Acids Res., 2011
Nucleic Acids Res., 2011
2010
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.
Nucleic Acids Res., 2010
Nucleic Acids Res., 2010
Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results.
Nucleic Acids Res., 2010
2009
PLoS Comput. Biol., 2009
STRING 8 - a global view on proteins and their functional interactions in 630 organisms.
Nucleic Acids Res., 2009
2008
Nucleic Acids Res., 2008
Nucleic Acids Res., 2008
Nucleic Acids Res., 2008
Cyclebase.org - a comprehensive multi-organism online database of cell-cycle experiments.
Nucleic Acids Res., 2008
2007
STRING 7 - recent developments in the integration and prediction of protein interactions.
Nucleic Acids Res., 2007
2006
2005
PLoS Comput. Biol., 2005
STRING: known and predicted protein-protein associations, integrated and transferred across organisms.
Nucleic Acids Res., 2005
Comparison of computational methods for the identification of cell cycle-regulated genes.
Bioinform., 2005
2004
ArrayProspector: a web resource of functional associations inferred from microarray expression data.
Nucleic Acids Res., 2004
Large-scale extraction of gene regulation for model organisms in an ontological context.
Silico Biol., 2004
Proceedings of the 42nd Annual Meeting of the Association for Computational Linguistics, 2004
2003
Bioinform., 2003
2000
Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation.
Bioinform., 2000