Subhajyoti De

According to our database, Subhajyoti De authored at least 14 papers between 2009 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Hierarchical and automated cell-type annotation and inference of cancer cell of origin with Census.

Bassel Ghaddar, Subhajyoti De

Bioinform., December, 2023

Denoising sparse microbial signals from single-cell sequencing of mammalian host tissues.

Bassel Ghaddar, Martin J. Blaser, Subhajyoti De

Nat. Comput. Sci., 2023

2020

Weakly Supervised Deep Nuclei Segmentation Using Partial Points Annotation in Histopathology Images.

Hui Qu, Pengxiang Wu, Qiaoying Huang, Jingru Yi, Zhennan Yan, Kang Li, Gregory M. Riedlinger, Subhajyoti De, Shaoting Zhang, Dimitris N. Metaxas

IEEE Trans. Medical Imaging, 2020

2019

Weakly Supervised Deep Nuclei Segmentation using Points Annotation in Histopathology Images.

Hui Qu, Pengxiang Wu, Qiaoying Huang, Jingru Yi, Gregory M. Riedlinger, Subhajyoti De, Dimitris N. Metaxas

Proceedings of the International Conference on Medical Imaging with Deep Learning, 2019

Improving Nuclei/Gland Instance Segmentation in Histopathology Images by Full Resolution Neural Network and Spatial Constrained Loss.

Hui Qu, Zhennan Yan, Gregory M. Riedlinger, Subhajyoti De, Dimitris N. Metaxas

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Joint Segmentation and Fine-Grained Classification of Nuclei in Histopathology Images.

Hui Qu, Gregory M. Riedlinger, Pengxiang Wu, Qiaoying Huang, Jingru Yi, Subhajyoti De, Dimitris N. Metaxas

Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

2018

Mutational signatures and mutable motifs in cancer genomes.

Igor B. Rogozin, Youri I. Pavlov, Alexander Goncearenco, Subhajyoti De, Artem G. Lada, Eugenia Poliakov, Anna R. Panchenko, David N. Cooper

Briefings Bioinform., 2018

2016

IMPACT: a whole-exome sequencing analysis pipeline for integrating molecular profiles with actionable therapeutics in clinical samples.

Jennifer Hintzsche, Jihye Kim, Vinod Kumar Yadav, Carol Amato, Steven E. Robinson, Eric Seelenfreund, Yiqun Shellman, Joshua Wisell, Allison Applegate, Martin McCarter, Neil Box, John Tentler, Subhajyoti De, William A. Robinson, Aik Choon Tan

J. Am. Medical Informatics Assoc., 2016

SomVarIUS: somatic variant identification from unpaired tissue samples.

Kyle S. Smith, Vinod Kumar Yadav, Shanshan Pei, Daniel A. Pollyea, Craig T. Jordan, Subhajyoti De

Bioinform., 2016

2015

An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples.

Vinod Kumar Yadav, Subhajyoti De

Briefings Bioinform., 2015

2014

Histone Modifications Are Associated with Transcript Isoform Diversity in Normal and Cancer Cells.

Ondrej Podlaha, Subhajyoti De, Mithat Gonen, Franziska Michor

PLoS Comput. Biol., 2014

The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment.

Subhajyoti De, Brent S. Pedersen, Katerina J. Kechris

Briefings Bioinform., 2014

2013

CruzDB: software for annotation of genomic intervals with UCSC genome-browser database.

Brent S. Pedersen, Ivana V. Yang, Subhajyoti De

Bioinform., 2013

2009

BloodExpress: a database of gene expression in mouse haematopoiesis.

Diego Miranda-Saavedra, Subhajyoti De, Matthew W. B. Trotter, Sarah A. Teichmann, Berthold Göttgens

Nucleic Acids Res., 2009