Burak Erman

Orcid: 0000-0002-2496-6059

According to our database1, Burak Erman authored at least 12 papers between 2002 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Links

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Bibliography

2024
Dynamic correlations: exact and approximate methods for mutual information.
Bioinform., February, 2024

2022
Prediction of allosteric communication pathways in proteins.
Bioinform., 2022

2021
Binding Mechanism of Neutralizing Nanobodies Targeting SARS-CoV-2 Spike Glycoprotein.
J. Chem. Inf. Model., 2021

2017
Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin.
PLoS Comput. Biol., 2017

2015
Unified Modeling of Familial Mediterranean Fever and Cryopyrin Associated Periodic Syndromes.
Comput. Math. Methods Medicine, 2015

2013
Simulation of temporal stochastic phenomena in electronic and biological systems: a comparative review, examples and synergies.
Proceedings of the IEEE/ACM International Conference on Computer-Aided Design, 2013

2012
Statistical Mechanics of Proteins in the Random Coil State.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012

2010
Predicting Important Residues and Interaction Pathways in Proteins Using Gaussian Network Model: Binding and Stability of HLA Proteins.
PLoS Comput. Biol., 2010

DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues.
Nucleic Acids Res., 2010

2004
Folding Dynamics of Proteins from Denatured to Native State: Principal Component Analysis.
J. Comput. Biol., 2004

2002
The elastic net algorithm and protein structure prediction.
J. Comput. Chem., 2002

Minimum Energy Configurations of the 2-Dimensional HP-Model of Proteins by Self-Organizing Networks.
J. Comput. Biol., 2002


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