Attila Gürsoy

According to our database, Attila Gürsoy authored at least 43 papers between 1991 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

The interaction between mutated DYRK1A and APP suggests a potential target for vascular cognitive impairment.

Melisa Ece Zeylan, Attila Gürsoy, Simge Senyuz, Ozlem Keskin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry.

Hansaim Lim, Chung-Jung Tsai, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy

Bioinform., October, 2022

SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2-human mimicry and interactions.

Damla Ovek, Ameer Taweel, Zeynep Abali, Ece Tezsezen, Yunus Emre Koroglu, Chung-Jung Tsai, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy

Bioinform., 2022

2020

Embedding Alternative Conformations of Proteins in Protein-Protein Interaction Networks.

Farideh Halakou, Attila Gürsoy, Ozlem Keskin

Proceedings of the Protein-Protein Interaction Networks, Methods and Protocols., 2020

Identification of potential inhibitors of human methionine aminopeptidase (type II) for cancer therapy: Structure-based virtual screening, ADMET prediction and molecular dynamics studies.

Jackson Weako, Abdullahi Ibrahim Uba, Ozlem Keskin, Attila Gürsoy, Kemal Yelekçi

Comput. Biol. Chem., 2020

Intelligent Edge Computing: State-of-the-art Techniques and Applications.

Waris Gill, Öznur Özkasap, Attila Gürsoy

Proceedings of the 28th Signal Processing and Communications Applications Conference, 2020

2019

3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients.

Cansu Dincer, Tugba Turkoglu Kaya, Ozlem Keskin, Attila Gürsoy, Nurcan Tuncbag

PLoS Comput. Biol., 2019

2018

Analysis of single amino acid variations in singlet hot spots of protein-protein interfaces.

E. Sila Ozdemir, Attila Gürsoy, Ozlem Keskin

Bioinform., 2018

2017

Topological, functional, and structural analyses of protein-protein interaction networks of breast cancer lung and brain metastases.

Farideh Halakou, Attila Gürsoy, Emel Sen Kilic, Ozlem Keskin

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2017

2014

The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer.

Saliha Ece Acuner Ozbabacan, Attila Gürsoy, Ruth Nussinov, Ozlem Keskin

PLoS Comput. Biol., 2014

PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes.

Alper Baspinar, Engin Cukuroglu, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy

Nucleic Acids Res., 2014

Modeling Structural Protein Interaction Networks for Betweenness Analysis.

Deniz Demircioglu, Ozlem Keskin, Attila Gürsoy

Proceedings of the Information Sciences and Systems 2014, 2014

2012

HotRegion: a database of predicted hot spot clusters.

Engin Cukuroglu, Attila Gürsoy, Ozlem Keskin

Nucleic Acids Res., 2012

A Strategy Based on Protein-Protein Interface Motifs May Help in Identifying Drug Off-Targets.

Billur Engin, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy

J. Chem. Inf. Model., 2012

2010

HotPoint: hot spot prediction server for protein interfaces.

Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy

Nucleic Acids Res., 2010

Interaction prediction and classification of PDZ domains.

Sibel Kalyoncu, Ozlem Keskin, Attila Gürsoy

BMC Bioinform., 2010

2009

Human Cancer Protein-Protein Interaction Network: A Structural Perspective.

Gozde Kar, Attila Gürsoy, Ozlem Keskin

PLoS Comput. Biol., 2009

Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.

Nurcan Tuncbag, Attila Gürsoy, Ozlem Keskin

Bioinform., 2009

A survey of available tools and web servers for analysis of protein-protein interactions and interfaces.

Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gürsoy, Ruth Nussinov

Briefings Bioinform., 2009

2008

HotSprint: database of computational hot spots in protein interfaces.

Emre Guney, Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy

Nucleic Acids Res., 2008

Principles of Protein Recognition and Properties of Protein-protein Interfaces.

Ozlem Keskin, Attila Gürsoy, Ruth Nussinov

Proceedings of the Protein-protein Interactions and Networks: Identification, 2008

2007

A Novel Economic-Based Scheduling Heuristic for Computational Grids.

Omer Ozan Sonmez, Attila Gürsoy

Int. J. High Perform. Comput. Appl., 2007

2006

Extracting Gene Regulation Information from Microarray Time-Series Data Using Hidden Markov Models.

Osman N. Yogurtçu, Engin Erzin, Attila Gürsoy

Proceedings of the Computer and Information Sciences, 2006

2005

PHR: A Parallel Hierarchical Radiosity System with Dynamic Load Balancing.

Ali Kemal Sinop, Tolga Abaci, Ümit Akkus, Attila Gürsoy, Ugur Güdükbay

J. Supercomput., 2005

PRISM: protein interactions by structural matching.

Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gürsoy

Nucleic Acids Res., 2005

Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces.

A. Selim Aytuna, Attila Gürsoy, Ozlem Keskin

Bioinform., 2005

Comparison of Pricing Policies for a Computational Grid Market.

Omer Ozan Sonmez, Attila Gürsoy

Proceedings of the Parallel Processing and Applied Mathematics, 2005

2004

Performance and modularity benefits of message-driven execution.

Attila Gürsoy, Laxmikant V. Kalé

J. Parallel Distributed Comput., 2004

Folding Dynamics of Proteins from Denatured to Native State: Principal Component Analysis.

Ahmet Palazoglu, Attila Gürsoy, Yaman Arkun, Burak Erman

J. Comput. Biol., 2004

An ontology for collaborative construction and analysis of cellular pathways.

Emek Demir, Ozgun Babur, Ugur Dogrusöz, Attila Gürsoy, A. Ayaz, Gürcan Gülesir, Gurkan Nisanci, Rengül Çetin-Atalay

Bioinform., 2004

2003

Data Decomposition for Parallel K-means Clustering.

Attila Gürsoy

Proceedings of the Parallel Processing and Applied Mathematics, 2003

Application of Data Mining Techniques to Protein-Protein Interaction Prediction.

A. Kocatas, Attila Gürsoy, Rengül Çetin-Atalay

Proceedings of the Computer and Information Sciences, 2003

2002

PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways.

Emek Demir, Ozgun Babur, Ugur Dogrusöz, Attila Gürsoy, Gurkan Nisanci, Rengül Çetin-Atalay, Mehmet Ozturk

Bioinform., 2002

2001

Parallel Pruning for K-Means Clustering on Shared Memory Architectures.

Attila Gürsoy, Ilker Cengiz

Proceedings of the Euro-Par 2001: Parallel Processing, 2001

2000

Neighbourhood Preserving Load Balancing: A Self-Organizing Approach.

Attila Gürsoy, Murat Atun

Proceedings of the Euro-Par 2000, Parallel Processing, 6th International Euro-Par Conference, Munich, Germany, August 29, 2000

1999

Parallel Hierarchical Radiosity.

R. Sireli, Attila Gürsoy

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1999

Mechanisms for Programming SMP Clusters.

Attila Gürsoy, Ilker Cengiz

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1999

Avoiding Algorithmic Obfuscation in a Message-Driven Parallel MD Code.

James C. Phillips, Robert Brunner, Aritomo Shinozaki, Milind A. Bhandarkar, Neal Krawetz, Attila Gürsoy, Laxmikant V. Kalé, Robert D. Skeel, Klaus Schulten

Proceedings of the Computational Molecular Dynamics: Challenges, Methods, Ideas, 1999

1996

NAMD: a Parallel, Object-Oriented Molecular Dynamics Program.

Mark T. Nelson, William Humphrey, Attila Gürsoy, Andrew Dalke, Laxmikant V. Kalé, Robert D. Skeel, Klaus Schulten

Int. J. High Perform. Comput. Appl., 1996

Simulating Message-Driven Programs.

Attila Gürsoy, Laxmikant V. Kalé

Proceedings of the 1996 International Conference on Parallel Processing, 1996

1995

Modularity, Reuse and Efficiency with Message-Driven Libraries.

Laxmikant V. Kalé, Attila Gürsoy

Proceedings of the Seventh SIAM Conference on Parallel Processing for Scientific Computing, 1995

1994

Dagger: Combining Benefits of Synchronous and Asynchronous Communication Styles.

Attila Gürsoy, Laxmikant V. Kalé

Proceedings of the 8th International Symposium on Parallel Processing, 1994

1991

High level support for divide-and-conquer parallelism.

Attila Gürsoy, Laxmikant V. Kalé

Proceedings of the Proceedings Supercomputing '91, 1991