Carlos D. Bustamante

According to our database, Carlos D. Bustamante authored at least 20 papers between 2005 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2026

Efficient Chromosome Parallelization for Precision Medicine Genomic Workflows.

Daniel Mas Montserrat, Ray Verma, Míriam Barrabés, Francisco M. de la Vega, Carlos D. Bustamante, Alexander G. Ioannidis

Proceedings of the Fortieth AAAI Conference on Artificial Intelligence, 2026

2023

Neural ADMIXTURE for rapid genomic clustering.

Albert Dominguez Mantes, Daniel Mas Montserrat, Carlos D. Bustamante, Xavier Giró-i-Nieto, Alexander G. Ioannidis

Nat. Comput. Sci., 2023

2022

Archetypal Analysis for population genetics.

Julia Gimbernat-Mayol, Albert Dominguez Mantes, Carlos D. Bustamante, Daniel Mas Montserrat, Alexander G. Ioannidis

PLoS Comput. Biol., 2022

2021

Discovering prescription patterns in pediatric acute-onset neuropsychiatric syndrome patients.

Arturo López Pineda, Armin Pourshafeie, Alexander G. Ioannidis, Collin McCloskey Leibold, Avis L. Chan, Carlos D. Bustamante, Jennifer Frankovich, Genevieve L. Wojcik

J. Biomed. Informatics, 2021

2020

LitGen: Genetic Literature Recommendation Guided by Human Explanations.

Allen Nie, Arturo L. Pineda, Matt W. Wright, Hannah Wand, Bryan Wulf, Helio A. Costa, Ronak Y. Patel, Carlos D. Bustamante, James Zou

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

Lai-Net: Local-Ancestry Inference with Neural Networks.

Daniel Mas Montserrat, Carlos D. Bustamante, Alexander G. Ioannidis

Proceedings of the 2020 IEEE International Conference on Acoustics, 2020

2019

Class-Conditional VAE-GAN for Local-Ancestry Simulation.

Daniel Mas Montserrat, Carlos D. Bustamante, Alexander G. Ioannidis

CoRR, 2019

2018

DeepTag: inferring diagnoses from veterinary clinical notes.

Allen Nie, Ashley Zehnder, Rodney López Page, Yuhui Zhang, Arturo López Pineda, Manuel A. Rivas, Carlos D. Bustamante, James Zou

npj Digit. Medicine, 2018

DeepTag: inferring all-cause diagnoses from clinical notes in under-resourced medical domain.

Allen Nie, Ashley Zehnder, Rodney López Page, Arturo L. Pineda, Manuel A. Rivas, Carlos D. Bustamante, James Zou

CoRR, 2018

Network Enhancement: a general method to denoise weighted biological networks.

Bo Wang, Armin Pourshafeie, Marinka Zitnik, Junjie Zhu, Carlos D. Bustamante, Serafim Batzoglou, Jure Leskovec

CoRR, 2018

2017

Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks.

Jean Louis Raisaro, Florian Tramèr, Zhanglong Ji, Diyue Bu, Yongan Zhao, W. Knox Carey, David D. Lloyd, Heidi Sofia, Dixie Baker, Paul Flicek, Suyash S. Shringarpure, Carlos D. Bustamante, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang, XiaoFeng Wang, Jean-Pierre Hubaux

J. Am. Medical Informatics Assoc., 2017

FIRE: functional inference of genetic variants that regulate gene expression.

Nilah M. Ioannidis, Joe R. Davis, Marianne K. DeGorter, Nicholas B. Larson, Shannon K. McDonnell, Amy J. French, Alexis J. Battle, Trevor J. Hastie, Stephen N. Thibodeau, Stephen B. Montgomery, Carlos D. Bustamante, Weiva Sieh, Alice S. Whittemore

Bioinform., 2017

2016

Efficient analysis of large datasets and sex bias with ADMIXTURE.

Suyash S. Shringarpure, Carlos D. Bustamante, Kenneth Lange, David H. Alexander

BMC Bioinform., 2016

2014

Imputation-based Assessment of Next Generation Rare Exome Variant Arrays.

Alicia R. Martin, Gerard Tse, Carlos D. Bustamante, Eimear E. Kenny

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

PATH-SCAN: A Reporting Tool for Identifying Clinically Actionable Variants.

Roxana Daneshjou, Zachary Zappala, Kimberly R. Kukurba, Sean M. Boyle, Kelly E. Ormond, Teri E. Klein, Michael Snyder, Carlos D. Bustamante, Russ B. Altman, Stephen B. Montgomery

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

2012

SnIPRE: Selection Inference Using a Poisson Random Effects Model.

Kirsten E. Eilertson, James G. Booth, Carlos D. Bustamante

PLoS Comput. Biol., 2012

2010

ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations.

Mark H. Wright, Chih-Wei Tung, Keyan Zhao, Andy Reynolds, Susan McCouch, Carlos D. Bustamante

Bioinform., 2010

2009

Improving the Fitness of High-Dimensional Biomechanical Models via Data-Driven Stochastic Exploration.

Veronica J. Santos, Carlos D. Bustamante, Francisco J. Valero Cuevas

IEEE Trans. Biomed. Eng., 2009

2005

Session Introduction: Inferring SNP Function Using Evolutionary, Structural and Computational Methods.

Matthew W. Dimmic, Shamil R. Sunyaev, Carlos D. Bustamante

Proceedings of the Biocomputing 2005, 2005

Detecting coevolving amino acid sites using Bayesian mutational mapping.

Matthew W. Dimmic, Melissa J. Hubisz, Carlos D. Bustamante, Rasmus Nielsen

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005