Caroline Colijn

According to our database, Caroline Colijn authored at least 17 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

A Vector Representation for Phylogenetic Trees.

Cédric Chauve, Caroline Colijn, Louxin Zhang

CoRR, 2024

2023

Pneumococcal population dynamics: Investigating vaccine-induced changes through multiscale modelling.

Nicola Mulberry, Alexander R. Rutherford, Caroline Colijn

PLoS Comput. Biol., December, 2023

Genome-Wide Association with Uncertainty in the Genetic Similarity Matrix.

Shijia Wang, Shufei Ge, Benjamin Sobkowiak, Liangliang Wang, Louis Grandjean, Caroline Colijn, Lloyd T. Elliott

J. Comput. Biol., February, 2023

2021

COVID-19 in schools: Mitigating classroom clusters in the context of variable transmission.

Paul F. Tupper, Caroline Colijn

PLoS Comput. Biol., 2021

Estimating Genetic Similarity Matrices Using Phylogenies.

Shijia Wang, Shufei Ge, Caroline Colijn, Priscila Biller, Liangliang Wang, Lloyd T. Elliott

J. Comput. Biol., 2021

2020

Classification of origin with feature selection and network construction for folk tunes.

Cornelia Metzig, Matthew Gould, Roshan Noronha, Roshani Abbey, Mark Sandler, Caroline Colijn

Pattern Recognit. Lett., 2020

Quantifying the impact of COVID-19 control measures using a Bayesian model of physical distancing.

Sean C. Anderson, Andrew M. Edwards, Madi Yerlanov, Nicola Mulberry, Jessica E. Stockdale, Sarafa A. Iyaniwura, Rebeca C. Falcao, Michael C. Otterstatter, Michael A. Irvine, Naveed Z. Janjua, Daniel Coombs, Caroline Colijn

PLoS Comput. Biol., 2020

A Maximum Entropy Method for the Prediction of Size Distributions.

Cornelia Metzig, Caroline Colijn

Entropy, 2020

2019

Phylogenies from dynamic networks.

Cornelia Metzig, Oliver Ratmann, Daniela Bezemer, Caroline Colijn

PLoS Comput. Biol., 2019

2017

Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks.

Don Klinkenberg, Jantien A. Backer, Xavier Didelot, Caroline Colijn, Jacco Wallinga

PLoS Comput. Biol., 2017

A curated genome-scale metabolic model of Bordetella pertussis metabolism.

Nick Fyson, Jerry King, Thomas Belcher, Andrew Preston, Caroline Colijn

PLoS Comput. Biol., 2017

2016

ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to <i>Mycobacterium tuberculosis</i> Infections.

Leonid Chindelevitch, Caroline Colijn, Prashini Moodley, Douglas Wilson, Ted Cohen

PLoS Comput. Biol., 2016

Asymptotic frequency of shapes in supercritical branching trees.

Giacomo Plazzotta, Caroline Colijn

J. Appl. Probab., 2016

2013

How the Dynamics and Structure of Sexual Contact Networks Shape Pathogen Phylogenies.

Katy Robinson, Nick Fyson, Ted Cohen, Christophe Fraser, Caroline Colijn

PLoS Comput. Biol., 2013

2011

Analysis of complex metabolic behavior through pathway decomposition.

Kuhn Ip, Caroline Colijn, Desmond S. Lun

BMC Syst. Biol., 2011

2009

Interpreting Expression Data with Metabolic Flux Models: Predicting <i>Mycobacterium tuberculosis</i> Mycolic Acid Production.

Caroline Colijn, Aaron Brandes, Jeremy Zucker, Desmond S. Lun, Brian Weiner, Maha R. Farhat, Tan-Yun Cheng, D. Branch Moody, Megan Murray, James E. Galagan

PLoS Comput. Biol., 2009

2007

Bifurcation and Bistability in a Model of Hematopoietic Regulation.

Caroline Colijn, Michael C. Mackey

SIAM J. Appl. Dyn. Syst., 2007