Maha R. Farhat

According to our database, Maha R. Farhat authored at least 9 papers between 2009 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Pitfalls of bacterial pan-genome analysis approaches: a case study of <i>Mycobacterium tuberculosis</i> and two less clonal bacterial species.

Maximillian G. Marin, Natalia Quinones-Olvera, Christoph Wippel, Mahboobeh Behruznia, Brendan M. Jeffrey, Michael Harris, Brendon C. Mann, Alex Rosenthal, Karen R. Jacobson, Robin M. Warren, Heng Li, Conor J. Meehan, Maha R. Farhat

Bioinform., 2025

Evolutionary Reasoning Does Not Arise in Standard Usage of Protein Language Models.

Yasha Ektefaie, Andrew Shen, Lavik Jain, Maha R. Farhat, Marinka Zitnik

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2025, 2025

2024

Evaluating generalizability of artificial intelligence models for molecular datasets.

Yasha Ektefaie, Andrew Shen, Daria Bykova, Maximillian G. Marin, Marinka Zitnik, Maha R. Farhat

Nat. Mac. Intell., 2024

Exploring gene content with pangene graphs.

Heng Li, Maximillian G. Marin, Maha R. Farhat

Bioinform., 2024

2023

Multimodal learning with graphs.

Yasha Ektefaie, George Dasoulas, Ayush Noori, Maha R. Farhat, Marinka Zitnik

Nat. Mac. Intell., April, 2023

Is Ignorance Bliss? The Role of Post Hoc Explanation Faithfulness and Alignment in Model Trust in Laypeople and Domain Experts.

Tessa Han, Yasha Ektefaie, Maha R. Farhat, Marinka Zitnik, Himabindu Lakkaraju

CoRR, 2023

2022

Geometric multimodal representation learning.

Yasha Ektefaie, George Dasoulas, Ayush Noori, Maha R. Farhat, Marinka Zitnik

CoRR, 2022

Benchmarking the empirical accuracy of short-read sequencing across the <i>M. tuberculosis</i> genome.

Maximillian G. Marin, Roger Vargas, Michael Harris, Brendan M. Jeffrey, L. Elaine Epperson, David Durbin, Michael Strong, Max Salfinger, Zamin Iqbal, Irada Akhundova, Sergo Vashakidze, Valeriu Crudu, Alex Rosenthal, Maha R. Farhat

Bioinform., 2022

2009

Interpreting Expression Data with Metabolic Flux Models: Predicting <i>Mycobacterium tuberculosis</i> Mycolic Acid Production.

Caroline Colijn, Aaron Brandes, Jeremy Zucker, Desmond S. Lun, Brian Weiner, Maha R. Farhat, Tan-Yun Cheng, D. Branch Moody, Megan Murray, James E. Galagan

PLoS Comput. Biol., 2009