Leonid Chindelevitch

Bioinform., October, 2023

Speeding Up the Structural Analysis of Metabolic Network Models Using the Fredman-Khachiyan Algorithm B.

[BibT_eX]

[DOI]

Nafiseh Sedaghat

Tamon Stephen

J. Comput. Biol., May, 2023

Generalizations of the genomic rank distance to indels.

[BibT_eX]

[DOI]

Lucas Peres Oliveira

Bioinform., March, 2023

Ten simple rules for the sharing of bacterial genotype - Phenotype data on antimicrobial resistance.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2023

2022

Applying data technologies to combat AMR: current status, challenges, and opportunities on the way forward.

[BibT_eX]

[DOI]

CoRR, 2022

Aristotle: stratified causal discovery for omics data.

[BibT_eX]

[DOI]

Mehrdad Mansouri

Sahand Khakabimamaghani

Martin Ester

BMC Bioinform., 2022

2021

INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis.

[BibT_eX]

[DOI]

Algorithms Mol. Biol., 2021

Predicting drug resistance in M. tuberculosis using a long-term recurrent convolutional network.

[BibT_eX]

[DOI]

Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021

2020

On the robustness of effectiveness estimation of nonpharmaceutical interventions against COVID-19 transmission.

[BibT_eX]

[DOI]

CoRR, 2020

Computing the distribution of the Robinson-Foulds distance.

[BibT_eX]

[DOI]

Maryam Hayati

Comput. Biol. Chem., 2020

An Interpretable Classification Method for Predicting Drug Resistance in M. Tuberculosis.

[BibT_eX]

[DOI]

Proceedings of the 20th International Workshop on Algorithms in Bioinformatics, 2020

How Robust are the Estimated Effects of Nonpharmaceutical Interventions against COVID-19?

[BibT_eX]

[DOI]

Proceedings of the Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, 2020

PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals.

[BibT_eX]

[DOI]

Proceedings of the Algorithms for Computational Biology, 2020

2019

Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework.

[BibT_eX]

[DOI]

BMC Bioinform., 2019

MCS2: minimal coordinated supports for fast enumeration of minimal cut sets in metabolic networks.

[BibT_eX]

[DOI]

Bioinform., 2019

Collaborative intra-tumor heterogeneity detection.

[BibT_eX]

[DOI]

Sahand Khakabimamaghani

Bioinform., 2019

A cubic algorithm for the generalized rank median of three genomes.

[BibT_eX]

[DOI]

Sean La

Joao Meidanis

Algorithms Mol. Biol., 2019

Generalizations of the Genomic Rank Distance to Indels.

[BibT_eX]

[DOI]

Proceedings of the Algorithms for Computational Biology - 6th International Conference, 2019

Counting Sorting Scenarios and Intermediate Genomes for the Rank Distance.

[BibT_eX]

[DOI]

Proceedings of the Algorithms for Computational Biology - 6th International Conference, 2019

2018

On the rank-distance median of 3 permutations.

[BibT_eX]

[DOI]

BMC Bioinform., 2018

Speeding up Dualization in the Fredman-Khachiyan Algorithm B.

[BibT_eX]

[DOI]

Nafiseh Sedaghat

Tamon Stephen

Proceedings of the 17th International Symposium on Experimental Algorithms, 2018

A Duality-Based Method for Identifying Elemental Balance Violations in Metabolic Network Models.

[BibT_eX]

[DOI]

Proceedings of the 18th International Workshop on Algorithms in Bioinformatics, 2018

PRINCE: Accurate Approximation of the Copy Number of Tandem Repeats.

[BibT_eX]

[DOI]

Proceedings of the 18th International Workshop on Algorithms in Bioinformatics, 2018

A Cubic Algorithm for the Generalized Rank Median of Three Genomes.

[BibT_eX]

[DOI]

Joao Meidanis

Proceedings of the Comparative Genomics - 16th International Conference, 2018

2017

On the Rank-Distance Median of 3 Permutations.

[BibT_eX]

[DOI]

Proceedings of the Comparative Genomics - 15th International Workshop, 2017

2016

ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2016

2013

Optimizing a global alignment of protein interaction networks.

[BibT_eX]

[DOI]

Bioinform., 2013

2012

Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge.

[BibT_eX]

[DOI]

BMC Bioinform., 2012

Assessing statistical significance in causal graphs.

[BibT_eX]

[DOI]

BMC Bioinform., 2012

Causal reasoning on biological networks: interpreting transcriptional changes.

[BibT_eX]

[DOI]

Bioinform., 2012

2011

Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes - (Extended Abstract).

[BibT_eX]

[DOI]

Proceedings of the Research in Computational Molecular Biology, 2011

Metabolic Network Analysis Demystified.

[BibT_eX]

[DOI]

Aviv Regev

Bonnie Berger

Proceedings of the Research in Computational Molecular Biology, 2011

2010

Local Optimization for Global Alignment of Protein Interaction Networks.

[BibT_eX]

[DOI]

Chung-Shou Liao

Bonnie Berger

Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

2008

Inverting the Viterbi algorithm: an abstract framework for structure design.

[BibT_eX]

[DOI]

Michael Schnall-Levin