Charles J. Vaske

According to our database, Charles J. Vaske authored at least 7 papers between 2009 and 2013.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2013

The UCSC Interaction Browser: multidimensional data views in pathway context.

Christopher K. Wong, Charles J. Vaske, Sam Ng, J. Zachary Sanborn, Stephen C. Benz, David Haussler, Joshua M. Stuart

Nucleic Acids Res., 2013

Learning subgroup-specific regulatory interactions and regulator independence with PARADIGM.

Andrew J. Sedgewick, Stephen C. Benz, Shahrooz Rabizadeh, Patrick Soon-Shiong, Charles J. Vaske

Bioinform., 2013

2012

The Integration of Biological Pathway Knowledge in Cancer Genomics: A review of existing computational approaches.

Vinay Varadan, Prateek Mittal, Charles J. Vaske, Stephen C. Benz

IEEE Signal Process. Mag., 2012

2011

The UCSC cancer genomics browser: update 2011.

J. Zachary Sanborn, Stephen C. Benz, Brian Craft, Christopher Szeto, Kord M. Kober, Laurence R. Meyer, Charles J. Vaske, Mary Goldman, Kayla E. Smith, Robert M. Kuhn, Donna Karolchik, W. James Kent, Joshua M. Stuart, David Haussler, Jingchun Zhu

Nucleic Acids Res., 2011

2010

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM.

Charles J. Vaske, Stephen C. Benz, J. Zachary Sanborn, Dent Earl, Christopher Szeto, Jingchun Zhu, David Haussler, Joshua M. Stuart

Bioinform., 2010

2009

A Factor Graph Nested Effects Model To Identify Networks from Genetic Perturbations.

Charles J. Vaske, Carrie House, Truong Luu, Bryan Frank, Chen-Hsiang Yeang, Norman H. Lee, Joshua M. Stuart

PLoS Comput. Biol., 2009

Inferring Disease-Related Pathways Using A Probabilistic Epistasis Model.

Pinal N. Kanabar, Charles J. Vaske, Chen-Hsiang Yeang, Fitnat H. Yildiz, Joshua M. Stuart

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009