Joshua M. Stuart
Orcid: 0000-0002-2171-565X
According to our database1,
Joshua M. Stuart
authored at least 35 papers
between 1998 and 2021.
Collaborative distances:
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Bibliography
2021
Accurate cancer phenotype prediction with AKLIMATE, a stacked kernel learner integrating multimodal genomic data and pathway knowledge.
PLoS Comput. Biol., 2021
2020
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020
2019
PLATYPUS: A Multiple-View Learning Predictive Framework for Cancer Drug Sensitivity Prediction.
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019
2018
Germline contamination and leakage in whole genome somatic single nucleotide variant detection.
BMC Bioinform., 2018
BMC Bioinform., 2018
2017
Tracing Co-Regulatory Network Dynamics in Noisy, Single-Cell Transcriptome Trajectories.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017
2016
PLoS Comput. Biol., 2016
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016
2015
J. Am. Medical Informatics Assoc., 2015
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015
2014
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014
2013
Nucleic Acids Res., 2013
Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE).
Bioinform., 2013
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013
2012
PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis.
Bioinform., 2012
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012
2011
2010
Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM.
Bioinform., 2010
2009
PLoS Comput. Biol., 2009
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009
2008
Information-based methods for predicting gene function from systematic gene knock-downs.
BMC Bioinform., 2008
2007
VisANT 3.0: new modules for pathway visualization, editing, prediction and construction.
Nucleic Acids Res., 2007
A search engine to identify pathway genes from expression data on multiple organisms.
BMC Syst. Biol., 2007
Proceedings of the Biocomputing 2007, 2007
2005
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005
Biological Pathway Prediction from Multiple Data Sources Using Iterative Bayesian Updating.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005
2002
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002
2000
Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000
1998
Learning the Grammar of Dance.
Proceedings of the Fifteenth International Conference on Machine Learning (ICML 1998), 1998