Vinay Varadan

According to our database, Vinay Varadan authored at least 25 papers between 2001 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

SYSMut: decoding the functional significance of rare somatic mutations in cancer.

Sirvan Khalighi, Peronne Joseph, Deepak Babu, Salendra Singh, Thomas LaFramboise, Kishore Guda, Vinay Varadan

Briefings Bioinform., 2022

2020

Deep learning-based prediction of response to HER2-targeted neoadjuvant chemotherapy from pre-treatment dynamic breast MRI: A multi-institutional validation study.

Nathaniel Braman, Mohammed El Adoui, Manasa Vulchi, Paulette Turk, Maryam Etesami, Pingfu Fu, Kaustav Bera, Stylianos Drisis, Vinay Varadan, Donna Plecha, Mohammed Benjelloun, Jame Abraham, Anant Madabhushi

CoRR, 2020

2019

Radiogenomic characterization of response to chemo-radiation therapy in glioblastoma is associated with PI3K/AKT/mTOR and apoptosis signaling pathways.

Niha G. Beig, Prateek Prasanna, Virginia B. Hill, Ruchika Verma, Vinay Varadan, Anant Madabhushi, Pallavi Tiwari

Proceedings of the Medical Imaging 2019: Computer-Aided Diagnosis, 2019

2017

Radiogenomic analysis of hypoxia pathway reveals computerized MRI descriptors predictive of overall survival in glioblastoma.

Niha G. Beig, Jay Patel, Prateek Prasanna, Sasan Partovi, Vinay Varadan, Anant Madabhushi, Pallavi Tiwari

Proceedings of the Medical Imaging 2017: Computer-Aided Diagnosis, 2017

2015

Non-linear Bayesian framework to determine the transcriptional effects of cancer-associated genomic aberrations.

Abolfazl Razi, Nilanjana Banerjee, Nevenka Dimitrova, Vinay Varadan

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

Identifying gene subnetworks associated with clinical outcome in ovarian cancer using Network Based Coalition Game.

Abolfazl Razi, Fatemeh Afghah, Vinay Varadan

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

2013

Identification and characterization of gene fusions in breast cancer - A non-trivial pursuit.

Vinay Varadan, Vartika Agrawal, Lyndsay N. Harris, Nevenka Dimitrova

Proceedings of the IEEE Global Conference on Signal and Information Processing, 2013

2012

The Integration of Biological Pathway Knowledge in Cancer Genomics: A review of existing computational approaches.

Vinay Varadan, Prateek Mittal, Charles J. Vaske, Stephen C. Benz

IEEE Signal Process. Mag., 2012

Statistical assessment of gene fusion detection algorithms using RNA Sequencing Data.

Vinay Varadan, Angel Janevski, Sitharthan Kamalakaran, Nilanjana Banerjee, Nevenka Dimitrova, Lyndsay N. Harris

Proceedings of the IEEE Statistical Signal Processing Workshop, 2012

2011

A method for finding novel associations between genome-wide copy number and dna methylation patterns.

Man-Hung Eric Tang, Vinay Varadan, Sid Kamalakaran, Michael Q. Zhang, Nevenka Dimitrova, James Hicks

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Comparative copy number variation from whole genome sequencing.

Angel Janevski, Vinay Varadan, Sitharthan Kamalakaran, Nilanjana Banerjee, Nevenka Dimitrova

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

2010

Pathway and network analysis probing epigenetic influences on chemosensitivity in ovarian cancer.

Nilanjana Banerjee, Angel Janevski, Sitharthan Kamalakaran, Vinay Varadan, Robert Lucito, Nevenka Dimitrova

Proceedings of the 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, 2010

2009

PAPAyA: a platform for breast cancer biomarker signature discovery, evaluation and assessment.

Angel Janevski, Sitharthan Kamalakaran, Nilanjana Banerjee, Vinay Varadan, Nevenka Dimitrova

BMC Bioinform., 2009

Tools for High Throughput Differential Methylation Study in Cancer.

Nevenka Dimitrova, Sitharthan Kamalakaran, Angel Janevski, Nilanjana Banerjee, Vinay Varadan, Robert Lucito, James Hicks

Proceedings of the ICT Innovations 2009, Ohrid, Macedonia, 28-30 September, 2009, 2009

Towards identification of thematic overlaps in gene sets.

Nilanjana Banerjee, Vinay Varadan, Sitharthan Kamalakaran, Angel Janevski

Proceedings of the 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, 2009

2006

Dynamical model reconstruction and accurate prediction of power-pool time series.

Vinay Varadan, Henry Leung, Éloi Bossé

IEEE Trans. Instrum. Meas., 2006

Inference of Disease-Related Molecular Logic from Systems-Based Microarray Analysis.

Vinay Varadan, Dimitris Anastassiou

PLoS Comput. Biol., 2006

Computational inference of the molecular logic for synaptic connectivity in <i>C. elegans</i>.

Vinay Varadan, David M. Miller III, Dimitris Anastassiou

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005

Unsupervised evidence integration.

Philip M. Long, Vinay Varadan, Sarah Gilman, Mark Treshock, Rocco A. Servedio

Proceedings of the Machine Learning, 2005

2003

Classification of audio radar signals using radial basis function neural networks.

Trent McConaghy, Henry Leung, Éloi Bossé, Vinay Varadan

IEEE Trans. Instrum. Meas., 2003

2002

Chaotic system reconstruction from noisy time series measurements using improved least squares genetic programming.

Vinay Varadan, Henry Leung

Proceedings of the 2002 International Symposium on Circuits and Systems, 2002

System Modeling and Design using Genetic Programming.

Henry Leung, Vinay Varadan

Proceedings of the 1st IEEE International Conference on Cognitive Informatics (ICCI 2002), 2002

2001

Reconstruction of polynomial systems from noisy time-series measurements using genetic programming.

Vinay Varadan, Henry Leung

IEEE Trans. Ind. Electron., 2001

Secure communication using a chaos based signal encryption scheme.

Krishnamurthy Murali, Haiyang Yu, Vinay Varadan, Henry Leung

IEEE Trans. Consumer Electron., 2001

Design of piece-wise maps for spread spectrum communication using genetic programming.

Vinay Varadan, Henry Leung

Proceedings of the 2001 International Symposium on Circuits and Systems, 2001