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Chen Li

Orcid: 0000-0002-8014-6848

Affiliations:
  • Zhejiang University School of Medicine, Department of Cell Biology and Medical Genetics, Hangzhou, China
  • University of Tokyo, Institute of Medical Science, Japan (2007 - 2012)
  • Yamaguchi University, Japan (former)


According to our database1, Chen Li authored at least 14 papers between 2005 and 2021.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

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Links

Online presence:

On csauthors.net:

Bibliography

2021
High-speed parameter search of dynamic biological pathways from time-course transcriptomic profiles using high-level Petri net.
[BibTeX]
[DOI]
Chen Li
,
Jiale Qin
,
Keisuke Kuroyanagi
,
Lu Lu
,
Masao Nagasaki
,
Satoru Miyano
Biosyst., 2021

2014
CSML2SBML: A novel tool for converting quantitative biological pathway models from CSML into SBML.
[BibTeX]
[DOI]
Chen Li
,
Masao Nagasaki
,
Emi Ikeda
,
Yayoi Sekiya
,
Satoru Miyano
Biosyst., 2014

2013
XiP: a computational environment to create, extend and share workflows.
[BibTeX]
[DOI]
Masao Nagasaki
,
André Fujita
,
Yayoi Sekiya
,
Ayumu Saito
,
Emi Ikeda
,
Chen Li
,
Satoru Miyano
Bioinform., 2013

2011
MIRACH: efficient model checker for quantitative biological pathway models.
[BibTeX]
[DOI]
Chuan Hock Koh
,
Masao Nagasaki
,
Ayumu Saito
,
Chen Li
,
Limsoon Wong
,
Satoru Miyano
Bioinform., 2011

2010
Cell Illustrator 4.0: A Computational Platform for Systems Biology.
[BibTeX]
[DOI]
Masao Nagasaki
,
Ayumu Saito
,
Euna Jeong
,
Chen Li
,
Kaname Kojima
,
Emi Ikeda
,
Satoru Miyano
Silico Biol., 2010

On Determining Firing Delay Time of Transitions for Petri Net Based Signaling Pathways by Introducing Stochastic Decision Rules.
[BibTeX]
[DOI]
Yoshimasa Miwa
,
Chen Li
,
Qi-Wei Ge
,
Hiroshi Matsuno
,
Satoru Miyano
Silico Biol., 2010

Delay Time Determination for the Timed Petri Net Model of a Signaling Pathway Based on Its Structural Information.
[BibTeX]
[DOI]
Yoshimasa Miwa
,
Yuki Murakami
,
Qi-Wei Ge
,
Chen Li
,
Hiroshi Matsuno
,
Satoru Miyano
IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2010

Time-dependent structural transformation analysis to high-level Petri net model with active state transition diagram.
[BibTeX]
[DOI]
Chen Li
,
Masao Nagasaki
,
Ayumu Saito
,
Satoru Miyano
BMC Syst. Biol., 2010

2009
Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension.
[BibTeX]
[DOI]
Chen Li
,
Masao Nagasaki
,
Kazuko Ueno
,
Satoru Miyano
BMC Syst. Biol., 2009

2008
Systematic reconstruction of TRANSPATH data into Cell System Markup Language.
[BibTeX]
[DOI]
Masao Nagasaki
,
Ayumu Saito
,
Chen Li
,
Euna Jeong
,
Satoru Miyano
BMC Syst. Biol., 2008

An Algorithm to Estimate Delay Times in Petri Net Models of Signaling Pathways with Experimental Data.
[BibTeX]
[DOI]
Kanji Hioka
,
Yoshimasa Miwa
,
Chen Li
,
Qi-Wei Ge
,
Hiroshi Matsuno
,
Satoru Miyano
Proceedings of the 3rd International ICST Conference on Bio-Inspired Models of Network, 2008

2006
Structural Modeling and Analysis of Signaling Pathways Based on Petri Nets.
[BibTeX]
[DOI]
Chen Li
,
Shunichi Suzuki
,
Qi-Wei Ge
,
Mitsuru Nakata
,
Hiroshi Matsuno
,
Satoru Miyano
J. Bioinform. Comput. Biol., 2006

Petri Net Based Descriptions for Systematic Understanding of Biological Pathways.
[BibTeX]
[DOI]
Hiroshi Matsuno
,
Chen Li
,
Satoru Miyano
IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2006

2005
Performance Evaluation of a Two-Processor Scheduling Method for Acyclic SWITCH-less Program Nets.
[BibTeX]
[DOI]
Qi-Wei Ge
,
Chen Li
,
Mitsuru Nakata
IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2005


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