Kaname Kojima

According to our database1, Kaname Kojima authored at least 22 papers between 2006 and 2018.

Collaborative distances:



In proceedings 
PhD thesis 


On csauthors.net:


Time-Series Filtering for Replicated Observations via a Kernel Approximate Bayesian Computation.
IEEE Trans. Signal Process., 2018

A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes.
BMC Genom., 2016

HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data.
BMC Genom., 2015

Estimating copy numbers of alleles from population-scale high-throughput sequencing data.
BMC Bioinform., 2015

SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints.
Proceedings of the Algorithms for Computational Biology - First International Conference, 2014

HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads.
Proceedings of the Algorithms for Computational Biology - First International Conference, 2014

iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data.
BMC Syst. Biol., 2013

TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference.
Bioinform., 2013

A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads.
Bioinform., 2013

Functional clustering of time series gene expression data by Granger causality.
BMC Syst. Biol., 2012

Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing.
BMC Genom., 2012

Optimal Search on Clustered Structural Constraint for Learning Bayesian Network Structure.
J. Mach. Learn. Res., 2010

Identification of Granger Causality between Gene Sets.
J. Bioinform. Comput. Biol., 2010

Cell Illustrator 4.0: A Computational Platform for Systems Biology.
In Silico Biology, 2010

An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information.
BMC Bioinform., 2010

A fast and robust statistical test based on likelihood ratio with Bartlett correction to identify Granger causality between gene sets.
Bioinform., 2010

Searching Optimal Bayesian Network Structure on Constraint Search Space: Super-Structure Approach.
Proceedings of the New Frontiers in Artificial Intelligence, 2010

Identifying Hidden Confounders in Gene Networks by Bayesian Networks.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

BFL: a node and edge betweenness based fast layout algorithm for large scale networks.
BMC Bioinform., 2009

Fast grid layout algorithm for biological networks with sweep calculation.
Bioinform., 2008

An efficient grid layout algorithm for biological networks utilizing various biological attributes.
BMC Bioinform., 2007

A weight estimation method using LDA for multi-band speech recognition.
Proceedings of the INTERSPEECH 2006, 2006