Chungong Yu

According to our database, Chungong Yu authored at least 10 papers between 2006 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

Designing faster mixed integer linear programming algorithm via learning the optimal path.

Ruizhi Liu, Liming Xu, Xulin Huang, Jingyan Sui, Shizhe Ding, Boyang Xia, Chungong Yu, Dongbo Bu

CoRR, January, 2026

2025

A survey on deep learning-based algorithms for the traveling salesman problem.

Jingyan Sui, Shizhe Ding, Xulin Huang, Yue Yu, Ruizhi Liu, Boyang Xia, Zhenxin Ding, Liming Xu, Haicang Zhang, Chungong Yu, Dongbo Bu

Frontiers Comput. Sci., June, 2025

2024

GPCR-BSD: a database of binding sites of human G-protein coupled receptors under diverse states.

Fan Liu, Han Zhou, Xiaonong Li, Liangliang Zhou, Chungong Yu, Haicang Zhang, Dongbo Bu, Xinmiao Liang

BMC Bioinform., December, 2024

Accurate and robust protein sequence design with CarbonDesign.

Milong Ren, Chungong Yu, Dongbo Bu, Haicang Zhang

Nat. Mac. Intell., 2024

2023

Accurate and efficient protein sequence design through learning concise local environment of residues.

Bin Huang, Tingwen Fan, Kaiyue Wang, Haicang Zhang, Chungong Yu, Shuyu Nie, Yangshuo Qi, Wei-Mou Zheng, Jian Han, Zheng Fan, Shiwei Sun, Sheng Ye, Huaiyi Yang, Dongbo Bu

Bioinform., March, 2023

Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms.

Bin Huang, Lupeng Kong, Chao Wang, Fusong Ju, Qi Zhang, Jianwei Zhu, Tiansu Gong, Haicang Zhang, Chungong Yu, Wei-Mou Zheng, Dongbo Bu

Genom. Proteom. Bioinform., 2023

Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model.

Shiwei Liu, Tian Zhu, Milong Ren, Chungong Yu, Dongbo Bu, Haicang Zhang

Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

2008

A Fragmentation Event Model for Peptide Identification by Mass Spectrometry.

Yu Lin, Yantao Qiao, Shiwei Sun, Chungong Yu, Gongjin Dong, Dongbo Bu

Proceedings of the Research in Computational Molecular Biology, 2008

2007

An Iterative Algorithm to Quantify Factors Influencing peptide Fragmentation during Tandem Mass Spectrometry.

Chungong Yu, Yu Lin, Shiwei Sun, Jinjin Cai, Jingfen Zhang, Dongbo Bu, Zhuo Zhang, Runsheng Chen

J. Bioinform. Comput. Biol., 2007

2006

A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data.

Zhuo Zhang, Shiwei Sun, Xiaopeng Zhu, Suhua Chang, Xiaofei Liu, Chungong Yu, Dongbo Bu, Runsheng Chen

BMC Bioinform., 2006