Dongbo Bu
Orcid: 0000-0003-4119-4238
According to our database1,
Dongbo Bu
authored at least 58 papers
between 2001 and 2023.
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Bibliography
2023
EMNGly: predicting N-linked glycosylation sites using the language models for feature extraction.
Bioinform., October, 2023
Accurate and efficient protein sequence design through learning concise local environment of residues.
Bioinform., March, 2023
SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
CoRR, 2023
Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023
2022
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs.
J. Comput. Biol., 2022
NIERT: Accurate Numerical Interpolation through Unifying Scattered Data Representations using Transformer Encoder.
CoRR, 2022
CCF Trans. High Perform. Comput., 2022
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction.
Bioinform., 2022
2021
BMC Bioinform., 2021
Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph.
BMC Bioinform., 2021
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Learning 3-opt heuristics for traveling salesman problem via deep reinforcement learning.
Proceedings of the Asian Conference on Machine Learning, 2021
2020
ISSEC: inferring contacts among protein secondary structure elements using deep object detection.
BMC Bioinform., 2020
Mut-Detecter: An EGFR activating mutation type classification method with a deep convolutional neural network.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
2019
Constrained maximum weighted bipartite matching: a novel approach to radio broadcast scheduling.
Sci. China Inf. Sci., 2019
De novo glycan structural identification from mass spectra using tree merging strategy.
Comput. Biol. Chem., 2019
Correction to: Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
BMC Bioinform., 2019
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
BMC Bioinform., 2019
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling.
BMC Bioinform., 2019
Bioinform., 2019
DIFFUSE: predicting isoform functions from sequences and expression profiles via deep learning.
Bioinform., 2019
2018
2017
Improving prediction of burial state of residues by exploiting correlation among residues.
BMC Bioinform., 2017
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts.
Bioinform., 2017
2016
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.
Bioinform., 2016
2015
BMC Bioinform., December, 2015
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
OpenMS-Simulator: an open-source software for theoretical tandem mass spectrum prediction.
BMC Bioinform., 2015
2013
Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles?
Algorithms Mol. Biol., 2013
Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013
2012
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012
2011
J. Comput. Sci. Technol., 2011
Lex-SVM: Exploring the Potential of exon Expression Profiling for Disease Classification.
J. Bioinform. Comput. Biol., 2011
ProbPS: A new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity.
BMC Bioinform., 2011
Incorporating Ab Initio energy into threading approaches for protein structure prediction.
BMC Bioinform., 2011
PI: An open-source software package for validation of the SEQUEST result and visualization of mass spectrum.
BMC Bioinform., 2011
Proceedings of the 2011 IEEE/ACM International Conference on Green Computing and Communications (GreenCom), 2011
2009
2008
FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
Bioinform., 2008
Proceedings of the Research in Computational Molecular Biology, 2008
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008
Proceedings of the Combinatorial Pattern Matching, 19th Annual Symposium, 2008
2007
An Iterative Algorithm to Quantify Factors Influencing peptide Fragmentation during Tandem Mass Spectrometry.
J. Bioinform. Comput. Biol., 2007
A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
2006
J. Comput. Sci. Technol., 2006
A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data.
BMC Bioinform., 2006
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006
2005
Nucleic Acids Res., 2005
Proceedings of the 11th International Conference on Parallel and Distributed Systems, 2005
2004
2001
Proceedings of The Tenth Text REtrieval Conference, 2001