Cinzia Pizzi

Orcid: 0000-0002-6616-4003

According to our database1, Cinzia Pizzi authored at least 39 papers between 2004 and 2023.

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Bibliography

2023
Efficient Hashing of Multiple Spaced Seeds with Application.
Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies, 2023

2021
MetaProb 2: Metagenomic Reads Binning Based on Assembly Using Minimizers and K-Mers Statistics.
J. Comput. Biol., 2021

Comparison of microbiome samples: methods and computational challenges.
Briefings Bioinform., 2021

2020
Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing.
J. Comput. Biol., 2020

Fast Approximation of Frequent k-Mers and Applications to Metagenomics.
J. Comput. Biol., 2020

MetaProb 2: Improving Unsupervised Metagenomic Binning with Efficient Reads Assembly Using Minimizers.
Proceedings of the Computational Advances in Bio and Medical Sciences, 2020

2018
Efficient Algorithms for Sequence Analysis with Entropic Profiles.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

FSH: fast spaced seed hashing exploiting adjacent hashes.
Algorithms Mol. Biol., 2018

2017
A new distributed alignment-free approach to compare whole proteomes.
Theor. Comput. Sci., 2017

Metagenomic reads binning with spaced seeds.
Theor. Comput. Sci., 2017

Fast Spaced Seed Hashing.
Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017

Consensus-based anomaly detection for efficient heating management.
Proceedings of the 2017 IEEE SmartWorld, 2017

How User Condition Affects Community Dynamics in a Forum on Autism.
Proceedings of the Eleventh International Conference on Web and Social Media, 2017

Binning metagenomic reads with probabilistic sequence signatures based on spaced seeds.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2017

2016
Sequence similarity measures based on bounded hamming distance.
Theor. Comput. Sci., 2016

MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.
Bioinform., 2016

MissMax: alignment-free sequence comparison with mismatches through filtering and heuristics.
Algorithms Mol. Biol., 2016

Higher recall in metagenomic sequence classification exploiting Overlapping Reads.
Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016

2015
A Filtering Approach for Alignment-Free Biosequences Comparison with Mismatches.
Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015

2014
Irredundant tandem motifs.
Theor. Comput. Sci., 2014

Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences.
Proceedings of the Algorithms in Bioinformatics - 14th International Workshop, 2014

Alignment Free Sequence Similarity with Bounded Hamming Distance.
Proceedings of the Data Compression Conference, 2014

2012
Efficient algorithms for the periodic subgraphs mining problem.
J. Discrete Algorithms, 2012

Characterization and Extraction of Irredundant Tandem Motifs.
Proceedings of the String Processing and Information Retrieval, 2012

2011
Finding Significant Matches of Position Weight Matrices in Linear Time.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Speedup for a periodic subgraph miner.
Inf. Process. Lett., 2011

Efficient algorithms for the discovery of gapped factors.
Algorithms Mol. Biol., 2011

2010
Efficient computation of statistics for words with mismatches.
Proceedings of the Structure Discovery in Biology: Motifs, Networks & Phylogenies, 06.06., 2010

2009
k-difference matching in amortized linear time for all the words in a text.
Theor. Comput. Sci., 2009

MOODS: fast search for position weight matrix matches in DNA sequences.
Bioinform., 2009

Expectation of Strings with Mismatches under Markov Chain Distribution.
Proceedings of the String Processing and Information Retrieval, 2009

2008
Fast profile matching algorithms - A survey.
Theor. Comput. Sci., 2008

Scoring Unusual Words with Varying Mismatch Errors.
Math. Comput. Sci., 2008

2007
Motif discovery by monotone scores.
Discret. Appl. Math., 2007

Fast Search Algorithms for Position Specific Scoring Matrices.
Proceedings of the Bioinformatics Research and Development, First International Conference, 2007

2006
On the Monotonicity of the String Correction Factor for Words with Mismatches.
Proceedings of the Combinatorial and Algorithmic Foundations of Pattern and Association Discovery, 14.05., 2006

2005
A multistep bioinformatic approach detects putative regulatory elements in gene promoters.
BMC Bioinform., 2005

2004
Monotone Scoring of Patterns with Mismatches: (Extended Abstract).
Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004

Optimal Discovery of Subword Associations in Strings.
Proceedings of the Discovery Science, 7th International Conference, 2004


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