Simona E. Rombo

According to our database1, Simona E. Rombo
  • authored at least 45 papers between 2004 and 2017.
  • has a "Dijkstra number"2 of four.

Timeline

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Bibliography

2017
Discriminative Pattern Discovery on Biological Networks
Springer Briefs in Computer Science, Springer, ISBN: 978-3-319-63476-0, 2017

Foreword: Algorithms, Strings and Theoretical Approaches in the Big Data Era - Special Issue in Honor of the 60th Birthday of Professor Raffaele Giancarlo.
Theor. Comput. Sci., 2017

2D Motif Basis Applied to the Classification of Digital Images.
Comput. J., 2017

2016
Discovering discriminative graph patterns from gene expression data.
Proceedings of the 31st Annual ACM Symposium on Applied Computing, 2016

Discovering New Proteins in Plant Mitochondria by RNA Editing Simulation.
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016), 2016

2015
Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning.
Bioinformatics, 2015

Searching for repetitions in biological networks: methods, resources and tools.
Briefings in Bioinformatics, 2015

2014
Irredundant tandem motifs.
Theor. Comput. Sci., 2014

An evolutionary restricted neighborhood search clustering approach for PPI networks.
Neurocomputing, 2014

Algorithms and tools for protein-protein interaction networks clustering, with a special focus on population-based stochastic methods.
Bioinformatics, 2014

Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies.
Briefings in Bioinformatics, 2014

Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences.
Proceedings of the Algorithms in Bioinformatics - 14th International Workshop, 2014

2013
Restricted Neighborhood Search Clustering Revisited: An Evolutionary Computation Perspective.
Proceedings of the Pattern Recognition in Bioinformatics, 2013

Image Classification Based on 2D Feature Motifs.
Proceedings of the Flexible Query Answering Systems - 10th International Conference, 2013

2012
Extracting string motif bases for quorum higher than two.
Theor. Comput. Sci., 2012

A Coclustering Approach for Mining Large Protein-Protein Interaction Networks.
IEEE/ACM Trans. Comput. Biology Bioinform., 2012

Characterization and Extraction of Irredundant Tandem Motifs.
Proceedings of the String Processing and Information Retrieval, 2012

Approximate matching over biological RDF graphs.
Proceedings of the ACM Symposium on Applied Computing, 2012

Experimental evaluation of topological-based fitness functions to detect complexes in PPI networks.
Proceedings of the Genetic and Evolutionary Computation Conference, 2012

Complex Detection in Protein-Protein Interaction Networks: A Compact Overview for Researchers and Practitioners.
Proceedings of the Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, 2012

2011
Asymmetric Comparison and Querying of Biological Networks.
IEEE/ACM Trans. Comput. Biology Bioinform., 2011

Image Compression by 2D Motif Basis.
Proceedings of the 2011 Data Compression Conference (DCC 2011), 2011

2010
New Trends in Graph Mining: Structural and Node-Colored Network Motifs.
IJKDB, 2010

Asymmetric Global Alignment of Protein-Protein Interaction Graph Databases (Extended Abstract).
Proceedings of the Eighteenth Italian Symposium on Advanced Database Systems, 2010

"Master-Slave" Biological Network Alignment.
Proceedings of the Bioinformatics Research and Applications, 6th International Symposium, 2010

IP6K Gene Discovery in Plant mtDNA.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2010

2009
A Summary of Genomic Databases: Overview and Discussion.
Proceedings of the Biomedical Data and Applications, 2009

Optimal extraction of motif patterns in 2D.
Inf. Process. Lett., 2009

Improving protein secondary structure predictions by prediction fusion.
Information Fusion, 2009

A technique to search for functional similarities in protein-protein interaction networks.
IJDMB, 2009

Extracting similar sub-graphs across PPI networks.
Proceedings of the 24th International Symposium on Computer and Information Sciences, 2009

Experimental Evaluation of Protein Secondary Structure Predictors.
Proceedings of the Computational Science, 2009

2008
Motif patterns in 2D.
Theor. Comput. Sci., 2008

Discovering meaningful protein-protein interaction modules by a co-clustering based approach.
Proceedings of the Sixteenth Italian Symposium on Advanced Database Systems, 2008

Singling out functional similarities in graph databases.
Proceedings of the Sixteenth Italian Symposium on Advanced Database Systems, 2008

Multi-functional Protein Clustering in PPI Networks .
Proceedings of the Bioinformatics Research and Development, 2008

Protein-Protein Interaction Network Querying by a "Focus and Zoom" Approach.
Proceedings of the Bioinformatics Research and Development, 2008

2007
PINCoC : A Co-clustering Based Approach to Analyze Protein-Protein Interaction Networks.
Proceedings of the Intelligent Data Engineering and Automated Learning, 2007

Protein Data Condensation for Effective Quaternary Structure Classification.
Proceedings of the Intelligent Data Engineering and Automated Learning, 2007

GRAPPIN: Bipartite GRAph Based Protein-Protein Interaction Network Similarity Search.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

2006
JSSPrediction: a Framework to Predict Protein Secondary Structures Using Integration.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

2005
Flexible Pattern Discovery with (Extended) Disjunctive Logic Programming.
Proceedings of the Foundations of Intelligent Systems, 15th International Symposium, 2005

2004
Derivazione efficiente di pattern strutturati frequenti da database di natura biologica.
Proceedings of the Twelfth Italian Symposium on Advanced Database Systems, 2004

Riduzione del traffico nei sistemi P2P: un approccio semantico.
Proceedings of the Twelfth Italian Symposium on Advanced Database Systems, 2004

Discovering Representative Models in Large Time Series Databases.
Proceedings of the Flexible Query Answering Systems, 6th International Conference, 2004


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