Laurent Noé

Bioinform., 2021

2020

Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing.

[BibT_eX]

[DOI]

J. Comput. Biol., 2020

2018

DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data.

[BibT_eX]

[DOI]

BMC Bioinform., 2018

2017

Best hits of 11110110111: model-free selection and parameter-free sensitivity calculation of spaced seeds.

[BibT_eX]

[DOI]

Algorithms Mol. Biol., 2017

2016

Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2016

2015

Smiles2Monomers: a link between chemical and biological structures for polymers.

[BibT_eX]

[DOI]

J. Cheminformatics, 2015

2014

A Coverage Criterion for Spaced Seeds and Its Applications to Support Vector Machine String Kernels and <i>k</i>-Mer Distances.

[BibT_eX]

[DOI]

Donald E. K. Martin

J. Comput. Biol., 2014

2012

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.

[BibT_eX]

[DOI]

Evguenia Kopylova

Hélène Touzet

Bioinform., 2012

2011

Subset Seed Extension to Protein BLAST.

[BibT_eX]

Proceedings of the BIOINFORMATICS 2011, 2011

2010

Back-translation for discovering distant protein homologies in the presence of frameshift mutations.

[BibT_eX]

[DOI]

Algorithms Mol. Biol., 2010

Designing Efficient Spaced Seeds for SOLiD Read Mapping.

[BibT_eX]

[DOI]

Adv. Bioinformatics, 2010

Seed Design Framework for Mapping SOLiD Reads.

[BibT_eX]

[DOI]

Proceedings of the Research in Computational Molecular Biology, 2010

2009

On Subset Seeds for Protein Alignment.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Back-Translation for Discovering Distant Protein Homologies.

[BibT_eX]

[DOI]

Proceedings of the Algorithms in Bioinformatics, 9th International Workshop, 2009

2008

Optimal neighborhood indexing for protein similarity search.

[BibT_eX]

[DOI]

BMC Bioinform., 2008

Efficient Seeding Techniques for Protein Similarity Search.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Development, 2008

2007

Subset Seed Automaton.

[BibT_eX]

[DOI]

Proceedings of the Implementation and Application of Automata, 2007

Protein Similarity Search with Subset Seeds on a Dedicated Reconfigurable Hardware.

[BibT_eX]

[DOI]

Proceedings of the Parallel Processing and Applied Mathematics, 2007

2006

A Unifying Framework for Seed Sensitivity and its Application to Subset Seeds.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2006

A unifying framework for seed sensitivity and its application to subset seeds (Extended abstract)

[BibT_eX]

[DOI]

CoRR, 2006

2005

Recherche de similarités dans les séquences d'ADN : modèles et algorithmes pour la conception de graines efficaces.

[BibT_eX]

[DOI]

PhD thesis, 2005

Multiseed Lossless Filtration.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2005

YASS: enhancing the sensitivity of DNA similarity search.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2005

2004

Improved hit criteria for DNA local alignment.

[BibT_eX]

[DOI]

BMC Bioinform., 2004

Multi-seed Lossless Filtration (Extended Abstract).

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 15th Annual Symposium, 2004

Estimating Seed Sensitivity on Homogeneous Alignments.

[BibT_eX]

[DOI]