Cong Liu

According to our database, Cong Liu authored at least 19 papers between 2016 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Enhancing phenotype recognition in clinical notes using large language models: PhenoBCBERT and PhenoGPT.

Jingye Yang, Cong Liu, Wendy Deng, Da Wu, Chunhua Weng, Yunyun Zhou, Kai Wang

Patterns, January, 2024

2023

Characterizing variability of electronic health record-driven phenotype definitions.

Pascal S. Brandt, Abel N. Kho, Yuan Luo, Jennifer A. Pacheco, Theresa L. Walunas, Hakon Hakonarson, George Hripcsak, Cong Liu, Ning Shang, Chunhua Weng, Nephi Walton, David S. Carrell, Paul K. Crane, Eric B. Larson, Christopher G. Chute, Iftikhar J. Kullo, Robert J. Carroll, Joshua C. Denny, Andrea H. Ramirez, Wei-Qi Wei, Jyotishman Pathak, Laura K. Wiley, Rachel L. Richesson, Justin B. Starren, Luke V. Rasmussen

J. Am. Medical Informatics Assoc., February, 2023

Multimodal Machine Learning Combining Facial Images and Clinical Texts Improves Diagnosis of Rare Genetic Diseases.

Da Wu, Jingye Yang, Steven Klein, Cong Liu, Tzung-Chien Hsieh, Peter Krawitz, Chunhua Weng, Gholson J. Lyon, Jennifer M. Kalish, Kai Wang

CoRR, 2023

2022

Leveraging electronic health record data for clinical trial planning by assessing eligibility criteria's impact on patient count and safety.

James R. Rogers, Jovana Pavisic, Casey N. Ta, Cong Liu, Ali Soroush, Ying Kuen Cheung, George Hripcsak, Chunhua Weng

J. Biomed. Informatics, 2022

Deep learning for rare disease: A scoping review.

Junghwan Lee, Cong Liu, Junyoung Kim, Zhehuan Chen, Yingcheng Sun, James R. Rogers, Wendy K. Chung, Chunhua Weng

J. Biomed. Informatics, 2022

2021

The COVID-19 Trial Finder.

Yingcheng Sun, Alex M. Butler, Fengyang Lin, Hao Liu, Latoya A. Stewart, Jae Hyun Kim, Betina Ross S. Idnay, Qingyin Ge, Xinyi Wei, Cong Liu, Chi Yuan, Chunhua Weng

J. Am. Medical Informatics Assoc., 2021

Towards clinical data-driven eligibility criteria optimization for interventional COVID-19 clinical trials.

Jae Hyun Kim, Casey N. Ta, Cong Liu, Cynthia Sung, Alex M. Butler, Latoya A. Stewart, Lyudmila Ena, James R. Rogers, Junghwan Lee, Anna Ostropolets, Patrick B. Ryan, Hao Liu, Shing M. Lee, Mitchell S. V. Elkind, Chunhua Weng

J. Am. Medical Informatics Assoc., 2021

<i>RePhine</i>: An Integrative Method for Identification of Drug Response-related Transcriptional Regulators.

Xujun Wang, Zhengtao Zhang, Wenyi Qin, Shiyi Liu, Cong Liu, Georgi Z. Genchev, Lijian Hui, Hongyu Zhao, Hui Lu

Genom. Proteom. Bioinform., 2021

Interactive Similarity-Based Search of Clinical Trials.

Yingcheng Sun, Jiaqi Tang, Alex Butler, Cong Liu, Yilu Fang, Chunhua Weng

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

Evaluation of Criteria2Query: Towards Augmented Intelligence for Cohort Identification.

Cong Liu, Hao Liu, Casey N. Ta, James Roger, Alex Butler, Junghwan Lee, Jaehyun Kim, Ning Shang, Chunhua Weng

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

Towards Better Diagnosis Prediction Using Bidirectional Recurrent Neural Networks.

Junghwan Lee, Cong Liu, Casey N. Ta, Chunhua Weng

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

2020

Natural language processing (NLP) tools in extracting biomedical concepts from research articles: a case study on autism spectrum disorder.

Jacqueline Peng, Mengge Zhao, James M. Havrilla, Cong Liu, Chunhua Weng, Whitney Guthrie, Robert Schultz, Kai Wang, Yunyun Zhou

BMC Medical Informatics Decis. Mak., 2020

2019

Doc2Hpo: a web application for efficient and accurate HPO concept curation.

Cong Liu, Fabricio Sampaio Peres Kury, Ziran Li, Casey N. Ta, Kai Wang, Chunhua Weng

Nucleic Acids Res., 2019

Ensembles of natural language processing systems for portable phenotyping solutions.

Cong Liu, Casey N. Ta, James R. Rogers, Ziran Li, Junghwan Lee, Alex M. Butler, Ning Shang, Fabricio Sampaio Peres Kury, Liwei Wang, Feichen Shen, Hongfang Liu, Lyudmila Ena, Carol Friedman, Chunhua Weng

J. Biomed. Informatics, 2019

Facilitating phenotype transfer using a common data model.

George Hripcsak, Ning Shang, Peggy L. Peissig, Luke V. Rasmussen, Cong Liu, Barbara Benoit, Robert J. Carroll, David S. Carrell, Joshua C. Denny, Ozan Dikilitas, Vivian S. Gainer, Kayla Marie Howell, Jeffrey G. Klann, Iftikhar J. Kullo, Todd Lingren, Frank D. Mentch, Shawn N. Murphy, Karthik Natarajan, Chunhua Weng

J. Biomed. Informatics, 2019

DQueST: dynamic questionnaire for search of clinical trials.

Cong Liu, Chi Yuan, Alex M. Butler, Richard D. Carvajal, Ziran Ryan Li, Casey N. Ta, Chunhua Weng

J. Am. Medical Informatics Assoc., 2019

2016

Meta-analysis of sex differences in gene expression in schizophrenia.

Wenyi Qin, Cong Liu, Monsheel Sodhi, Hui Lu

BMC Syst. Biol., 2016

High-dimensional omics data analysis using a variable screening protocol with prior knowledge integration (SKI).

Cong Liu, Jianping Jiang, Jianlei Gu, Zhangsheng Yu, Tao Wang, Hui Lu

BMC Syst. Biol., 2016

A novel scoring estimator to screening for oncogenic chimeric transcripts in cancer transcriptome sequencing.

Jianlei Gu, Yao Lu, Shi-Yi Liu, Cong Liu, Hui Lu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016