Daming Zhu

According to our database, Daming Zhu authored at least 133 papers between 1994 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Flanked Block-Interchange Distance on Strings.

Tiantian Li, Haitao Jiang, Binhai Zhu, Lusheng Wang, Daming Zhu

IEEE ACM Trans. Comput. Biol. Bioinform., 2024

2023

ContactLib-ATT: A Structure-Based Search Engine for Homologous Proteins.

Cheng Chen, Yuguo Zha, Daming Zhu, Kang Ning, Xuefeng Cui

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Men Can't Always be Transformed into Mice: Decision Algorithms and Complexity for Sorting by Symmetric Reversals.

Xin Tong, Yixiao Yu, Ziyi Fang, Haitao Jiang, Lusheng Wang, Binhai Zhu, Daming Zhu

CoRR, 2023

On Sorting by Flanked Transpositions.

Huixiu Xu, Xin Tong, Haitao Jiang, Lusheng Wang, Binhai Zhu, Daming Zhu

Proceedings of the Bioinformatics Research and Applications - 19th International Symposium, 2023

Cabbage Can't Always Be Transformed into Turnip: Decision Algorithms for Sorting by Symmetric Reversals.

Xin Tong, Yixiao Yu, Ziyi Fang, Haitao Jiang, Lusheng Wang, Binhai Zhu, Daming Zhu

Proceedings of the Computing and Combinatorics - 29th International Conference, 2023

Longest Order Conserved Repetition-free Subsequences.

Shu Zhang, Qichen Wang, Daming Zhu, Haitao Jiang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Minimize Maximum Coverage of Fragment Alignment Selection.

Yuyang Wang, Haitao Jiang, Haodi Feng, Daming Zhu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Improved Approximation Algorithms for Sorting Unsigned Genomes by Reversals.

Chengcheng Sun, Haitao Jiang, Daming Zhu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

De Novo Molecular Structure Generation from Mass Spectra.

Yanmin Liu, Xuan Zhang, Wei Zhao, Daming Zhu, Xuefeng Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

Identification and Analysis of Landslides in the Ahai Reservoir Area of the Jinsha River Basin Using a Combination of DS-InSAR, Optical Images, and Field Surveys.

Yongfa Li, Xiaoqing Zuo, Daming Zhu, Wenhao Wu, Xu Yang, Shipeng Guo, Chao Shi, Cheng Huang, Fang Li, Xinyu Liu

Remote. Sens., December, 2022

Approximation algorithms for sorting by bounded singleton moves.

Shengjun Xie, Haodi Feng, Haitao Jiang, Daming Zhu

Theor. Comput. Sci., 2022

MultiTrans: An Algorithm for Path Extraction Through Mixed Integer Linear Programming for Transcriptome Assembly.

Jin Zhao, Haodi Feng, Daming Zhu, Yu Lin

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Algorithms and Hardness for Scaffold Filling to Maximize Increased Duo-Preservations.

Jingjing Ma, Haitao Jiang, Daming Zhu, Runmin Yang

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

mzMD: visualization-oriented MS data storage and retrieval.

Runmin Yang, Jingjing Ma, Shu Zhang, Yu Zheng, Lusheng Wang, Daming Zhu

Bioinform., 2022

DLmeta: a deep learning method for metagenomic identification.

Yu Zhang, Chenchen Li, Haodi Feng, Daming Zhu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Pretraining Transformers for TCR-pMHC Binding Prediction.

Jinsheng Shang, Qihong Jiao, Cheng Chen, Daming Zhu, Xuefeng Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Predicting Algorithm of Transcription Factor Binding Sites Based on Weighted Multi-Grained Scanning.

Zhendong Liu, Dongyan Li, Xi Chen, Xinrong Lv, Daming Zhu, Xiaofeng Li

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Prediction Algorithm of DNA Sites Based on Weighted Feature Matrix.

Zhendong Liu, Xi Chen, Dongyan Li, Xinrong Lv, Daming Zhu, Xiaofeng Li

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Longest k-tuple Common Sub-Strings.

Tiantian Li, Daming Zhu, Haitao Jiang, Haodi Feng, Xuefeng Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

Approximation algorithms for the maximum vertex coverage problem on bounded degree graphs.

Peiyan Zhou, Haitao Jiang, Daming Zhu, Binhai Zhu

Theor. Comput. Sci., 2021

On the solution bound of two-sided scaffold filling.

Jingjing Ma, Daming Zhu, Haitao Jiang, Binhai Zhu

Theor. Comput. Sci., 2021

Hyperspectral Prediction of Soil Total Salt Content by Different Disturbance Degree under a Fractional-Order Differential Model with Differing Spectral Transformations.

Anhong Tian, Junsan Zhao, Bo-Hui Tang, Daming Zhu, Chengbiao Fu, Heigang Xiong

Remote. Sens., 2021

Study on the Pretreatment of Soil Hyperspectral and Na+ Ion Data under Different Degrees of Human Activity Stress by Fractional-Order Derivatives.

Anhong Tian, Junsan Zhao, Bo-Hui Tang, Daming Zhu, Chengbiao Fu, Heigang Xiong

Remote. Sens., 2021

Estimation of Salinity Content in Different Saline-Alkali Zones Based on Machine Learning Model Using FOD Pretreatment Method.

Chengbiao Fu, Anhong Tian, Daming Zhu, Junsan Zhao, Heigang Xiong

Remote. Sens., 2021

A 43-approximation algorithm for the Maximum Internal Spanning Tree Problem.

Xingfu Li, Daming Zhu, Lusheng Wang

J. Comput. Syst. Sci., 2021

SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data.

Wenyan Gu, Aizhong Zhou, Lusheng Wang, Shiwei Sun, Xuefeng Cui, Daming Zhu

J. Comput. Biol., 2021

Sorting a Permutation by Best Short Swaps.

Shu Zhang, Daming Zhu, Haitao Jiang, Jiong Guo, Haodi Feng, Xiaowen Liu

Algorithmica, 2021

mzMD: A New Storage and Retrieval System for Mass Spectrometry Data.

Runmin Yang, Jingjing Ma, Shu Zhang, Yu Zheng, Lusheng Wang, Daming Zhu

Proceedings of the Intelligent Computing Theories and Application, 2021

rzMLP-DTA: gMLP network with ReZero for sequence-based drug-target affinity prediction.

Zongzhao Qiu, Qihong Jiao, Yuxiao Wang, Cheng Chen, Daming Zhu, Xuefeng Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

TransCoord: Genome-guided Transcripts Assembly by Coordinating Candidate Paths into Two-phased Linear Programming.

Chenchen Li, Jin Zhao, Haodi Feng, Daming Zhu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Hydrogen bonds meet self-attention: all you need for protein structure embedding.

Cheng Chen, Yuguo Zha, Daming Zhu, Kang Ning, Xuefeng Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

Corrections to "IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads".

Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads.

Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

PASA: Identifying More Credible Structural Variants of Hedou12.

Huiqiang Jia, Haichao Wei, Daming Zhu, Jingjing Ma, Hai Yang, Ruizhi Wang, Xianzhong Feng

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Improved detection algorithm for copy number variations based on hidden Markov model.

Hai Yang, Daming Zhu

Multim. Tools Appl., 2020

A 1.375-approximation algorithm for unsigned translocation sorting.

Lianrong Pu, Daming Zhu, Haitao Jiang

J. Comput. Syst. Sci., 2020

Maximum Stacking Base Pairs: Hardness and Approximation by Nonlinear Linear Programming-Rounding.

Lixin Liu, Haitao Jiang, Peiqiang Liu, Binhai Zhu, Daming Zhu

J. Comput. Biol., 2020

SVLR: Genome Structure Variant Detection Using Long Read Sequencing Data.

Wenyan Gu, Aizhong Zhou, Lusheng Wang, Shiwei Sun, Xuefeng Cui, Daming Zhu

Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020

2019

An approximation algorithm for genome sorting by reversals to recover all adjacencies.

Shanshan Zhai, Peng Zhang, Daming Zhu, Weitian Tong, Yao Xu, Guohui Lin

J. Comb. Optim., 2019

Combinatorial Detection Algorithm for Copy Number Variations Using High-throughput Sequencing Reads.

Hai Yang, Daming Zhu

Int. J. Pattern Recognit. Artif. Intell., 2019

Improved predicting algorithm of RNA pseudoknotted structure.

Zhendong Liu, Daming Zhu, Qionghai Dai

Int. J. Comput. Sci. Eng., 2019

DTA-SiST: de novo transcriptome assembly by using simplified suffix trees.

Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu

BMC Bioinform., 2019

Maximum Stacking Base Pairs: Hardness and Approximation by Nonlinear LP-Rounding.

Lixin Liu, Haitao Jiang, Peiqiang Liu, Binhai Zhu, Daming Zhu

Proceedings of the Bioinformatics Research and Applications - 15th International Symposium, 2019

A 2-Approximation Algorithm for the Complementary Maximal Strip Recovery Problem.

Haitao Jiang, Jiong Guo, Daming Zhu, Binhai Zhu

Proceedings of the 30th Annual Symposium on Combinatorial Pattern Matching, 2019

An Approximation Algorithm for Sorting by Bounded Singleton Moves.

Shengjun Xie, Haodi Feng, Haitao Jiang, Junfeng Luan, Daming Zhu

Proceedings of the Computing and Combinatorics - 25th International Conference, 2019

2018

Preface.

Daming Zhu, Sergey Bereg

Theor. Comput. Sci., 2018

Can a breakpoint graph be decomposed into none other than 2-cycles?

Lianrong Pu, Yu Lin, Daming Zhu, Haitao Jiang

Theor. Comput. Sci., 2018

A 2-approximation algorithm for the contig-based genomic scaffold filling problem.

Haitao Jiang, Letu Qingge, Daming Zhu, Binhai Zhu

J. Bioinform. Comput. Biol., 2018

Predicting Model and Algorithm in RNA Folding Structure Including Pseudoknots.

Zhendong Liu, Daming Zhu, Qionghai Dai

Int. J. Pattern Recognit. Artif. Intell., 2018

DTAST: A Novel Radical Framework for de Novo Transcriptome Assembly Based on Suffix Trees.

Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu

Proceedings of the Intelligent Computing Theories and Application, 2018

Improved Indel Detection Algorithm Based on Split-Read and Read-Depth.

Hai Yang, Daming Zhu, Huiqiang Jia

Proceedings of the Intelligent Computing Methodologies - 14th International Conference, 2018

PASA: Identifying More Credible Structural Variants of Hedou12.

Huiqiang Jia, Haichao Wei, Daming Zhu, Ruizhi Wang, Haodi Feng, Xiangzhong Feng

Proceedings of the Intelligent Computing Theories and Application, 2018

Can a permutation be sorted by best short swaps?.

Shu Zhang, Daming Zhu, Haitao Jiang, Jingjing Ma, Jiong Guo, Haodi Feng

Proceedings of the Annual Symposium on Combinatorial Pattern Matching, 2018

The Longest Common Exemplar Subsequence Problem.

Shu Zhang, Ruizhi Wang, Daming Zhu, Haitao Jiang, Haodi Feng, Jiong Guo, Xiaowen Liu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

Approximating Max NAE-k-SAT by anonymous local search.

Aiyong Xian, Kaiyuan Zhu, Daming Zhu, Lianrong Pu, Hong Liu

Theor. Comput. Sci., 2017

Improved algorithms for intermediate dataset storage in a cloud-based dataflow.

Jie Cheng, Daming Zhu, Binhai Zhu

Theor. Comput. Sci., 2017

IsoTree: De Novo Transcriptome Assembly from RNA-Seq Reads - (Extended Abstract).

Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu

Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

A 1.4-Approximation Algorithm for Two-Sided Scaffold Filling.

Jingjing Ma, Haitao Jiang, Daming Zhu, Shu Zhang

Proceedings of the Frontiers in Algorithmics - 11th International Workshop, 2017

A New Approximation Algorithm for the Maximum Stacking Base Pairs Problem from RNA Secondary Structures Prediction.

Aizhong Zhou, Haitao Jiang, Jiong Guo, Daming Zhu

Proceedings of the Combinatorial Optimization and Applications, 2017

A spectrum graph-based protein sequence filtering algorithm for proteoform identification by top-down mass spectrometry.

Runmin Yang, Daming Zhu, Qiang Kou, Poornima Bhat-Nakshatri, Harikrishna Nakshatri, Si Wu, Xiaowen Liu

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016

A 1.5-Approximation Algorithm for Two-Sided Scaffold Filling.

Nan Liu, Daming Zhu, Haitao Jiang, Binhai Zhu

Algorithmica, 2016

A New Approximation Algorithm for Unsigned Translocation Sorting.

Lianrong Pu, Daming Zhu, Haitao Jiang

Proceedings of the Algorithms in Bioinformatics - 16th International Workshop, 2016

Genomic Scaffold Filling Revisited.

Haitao Jiang, Chenglin Fan, Boting Yang, Farong Zhong, Daming Zhu, Binhai Zhu

Proceedings of the 27th Annual Symposium on Combinatorial Pattern Matching, 2016

Mining structural variants of Heduo12 using paired-end reads.

Huiqiang Jia, Haicho Wei, Daming Zhu, Jingjing Ma, Hai Yang, Ruizhi Wang, Xianzhong Feng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

A factor-(1.408 + ε) approximation for sorting unsigned genomes by reciprocal translocations.

Haitao Jiang, Lusheng Wang, Binhai Zhu, Daming Zhu

Theor. Comput. Sci., 2015

A Dynamic Programming Algorithm For (1, 2)-Exemplar Breakpoint Distance.

Zhexue Wei, Daming Zhu, Lusheng Wang

J. Comput. Biol., 2015

Isomorphism and similarity for 2-generation pedigrees.

Haitao Jiang, Guohui Lin, Weitian Tong, Daming Zhu, Binhai Zhu

BMC Bioinform., 2015

Local Search to Approximate Max NAE- k k -Sat Tightly.

Aiyong Xian, Kaiyuan Zhu, Daming Zhu, Lianrong Pu

Proceedings of the Frontiers in Algorithmics - 9th International Workshop, 2015

A New Algorithm for Intermediate Dataset Storage in a Cloud-Based Dataflow.

Jie Cheng, Daming Zhu, Binhai Zhu

Proceedings of the Frontiers in Algorithmics - 9th International Workshop, 2015

Approximation and Nonapproximability for the One-Sided Scaffold Filling Problem.

Haitao Jiang, Jingjing Ma, Junfeng Luan, Daming Zhu

Proceedings of the Computing and Combinatorics - 21st International Conference, 2015

Predicting Algorithm of RNA Folding Structure with Pseudoknots.

Zhendong Liu, Daming Zhu, Qionghai Dai

Proceedings of the 11th International Conference on Computational Intelligence and Security, 2015

2014

Predicting scheme of RNA folding structure including pseudoknots.

Zhendong Liu, Daming Zhu, Hongwei Ma

Int. J. Sens. Networks, 2014

A 4/3-approximation algorithm for finding a spanning tree to maximize its internal vertices.

Xingfu Li, Daming Zhu

CoRR, 2014

Approximating the Maximum Internal Spanning Tree Problem via a Maximum Path-Cycle Cover.

Xingfu Li, Daming Zhu

Proceedings of the Algorithms and Computation - 25th International Symposium, 2014

An 5/4-Approximation Algorithm for Sorting Permutations by Short Block Moves.

Haitao Jiang, Haodi Feng, Daming Zhu

Proceedings of the Algorithms and Computation - 25th International Symposium, 2014

A (1.408+ε)-Approximation Algorithm for Sorting Unsigned Genomes by Reciprocal Translocations.

Haitao Jiang, Lusheng Wang, Binhai Zhu, Daming Zhu

Proceedings of the Frontiers in Algorithmics - 8th International Workshop, 2014

A parameterized algorithm for (1, 2)-exemplar breakpoint distance.

Zhexue Wei, Daming Zhu, Lusheng Wang

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

Sorting genomes by generalized translocations.

Xiao Yin, Daming Zhu

Theor. Comput. Sci., 2013

Parameterized complexity of control by voter selection in Maximin, Copeland, Borda, Bucklin, and Approval election systems.

Hong Liu, Daming Zhu

Theor. Comput. Sci., 2013

An Exact Algorithm for the Zero Exemplar Breakpoint Distance Problem.

Daming Zhu, Lusheng Wang

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

An Improved Approximation Algorithm for Scaffold Filling to Maximize the Common Adjacencies.

Nan Liu, Haitao Jiang, Daming Zhu, Binhai Zhu

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

New Heuristic Algorithm of RNA Structure Prediction Including Pseudoknots.

Zhendong Liu, Daming Zhu

J. Comput., 2013

Implementing program extraction from CL1-proofs.

Meixia Qu, Ke Chen, Daming Zhu, Junfeng Luan

CoRR, 2013

Complexity and Approximation Results for the Min-Sum and Min-Max Disjoint Paths Problems.

Peng Zhang, Wenbo Zhao, Daming Zhu

Comput. Informatics, 2013

The Algorithm for the Two-Sided Scaffold Filling Problem.

Nan Liu, Daming Zhu

Proceedings of the Theory and Applications of Models of Computation, 2013

An Approximation Scheme for RNA Folding Structure Prediction Including Pseudoknots.

Zhendong Liu, Daming Zhu, Wei Cui, Nan Liu

Proceedings of the Ninth International Conference on Computational Intelligence and Security, 2013

A Dynamic Programming Algorithm for Unsigned (1, 2)-Exemplar Breakpoint Distance Problem with Span Constraint.

Zhexue Wei, Daming Zhu

Proceedings of the Sixth International Conference on Business Intelligence and Financial Engineering, 2013

The Duplication-Loss Problem: Novel Algorithms Based on k-NNI Local Search.

Hui Wang, Daming Zhu

Proceedings of the Sixth International Conference on Business Intelligence and Financial Engineering, 2013

2012

A (1+ε)-approximation algorithm for sorting by short block-moves.

Haitao Jiang, Daming Zhu, Binhai Zhu

Theor. Comput. Sci., 2012

A new approximation algorithm for cut-and-paste sorting of unsigned circular permutations.

Xiaowen Lou, Daming Zhu

J. Comput. Syst. Sci., 2012

Minimum common string partition revisited.

Haitao Jiang, Binhai Zhu, Daming Zhu, Hong Zhu

J. Comb. Optim., 2012

An approximation algorithm for the Generalized k-Multicut problem.

Peng Zhang, Daming Zhu, Junfeng Luan

Discret. Appl. Math., 2012

On the toggling-branching recurrence of Computability Logic

Meixia Qu, Junfeng Luan, Daming Zhu

CoRR, 2012

Protein-protein binding site identification by enumerating the configurations.

Fei Guo, Shuai Cheng Li, Lusheng Wang, Daming Zhu

BMC Bioinform., 2012

De Novo Peptide Sequencing Based on Vertex Contraction Algorithm.

Zhexue Wei, Daming Zhu

Proceedings of the Fifth International Joint Conference on Computational Sciences and Optimization, 2012

On Editing Graphs into 2-Club Clusters.

Hong Liu, Peng Zhang, Daming Zhu

Proceedings of the Frontiers in Algorithmics and Algorithmic Aspects in Information and Management, 2012

2011

Analysis of the Hamming Weight of the Extended wmbNAF.

Ming Li, Ali Miri, Daming Zhu

IACR Cryptol. ePrint Arch., 2011

A 14/11-approximation algorithm for sorting by short block-moves.

Haitao Jiang, Daming Zhu

Sci. China Inf. Sci., 2011

Algorithms for sorting unsigned linear genomes by the DCJ operations.

Haitao Jiang, Binhai Zhu, Daming Zhu

Bioinform., 2011

Tight Bounds on Local Search to Approximate the Maximum Satisfiability Problems.

Daming Zhu, Shaohan Ma, Pingping Zhang

Proceedings of the Computing and Combinatorics - 17th Annual International Conference, 2011

New Heuristic Algorithm of RNA Secondary Structure Prediction with Pseudoknots.

Zhendong Liu, Zhijun Zhang, Zaixue Liu, Daming Zhu

Proceedings of the Seventh International Conference on Computational Intelligence and Security, 2011

2010

A predicting algorithm of RNA secondary structure based on stems.

Zhendong Liu, Hengwu Li, Daming Zhu

Kybernetes, 2010

Parameterized complexity of control problems in Maximin election.

Hong Liu, Daming Zhu

Inf. Process. Lett., 2010

2009

Parameterized computational complexity of control problems in voting systems.

Hong Liu, Haodi Feng, Daming Zhu, Junfeng Luan

Theor. Comput. Sci., 2009

Polynomial-Time Algorithm for Sorting by Generalized Translocations.

Xiao Yin, Daming Zhu

Proceedings of the Theory and Applications of Models of Computation, 6th Annual Conference, 2009

Parameterized Complexity of Finding Elementary Modes in Metabolic Networks.

Hong Liu, Haodi Feng, Daming Zhu

Proceedings of the International Joint Conferences on Bioinformatics, 2009

A Bicriteria Approximation Algorithm for Generalized k-Multicut in Trees.

Peng Zhang, Daming Zhu, Junfeng Luan

Proceedings of the Second International Joint Conference on Computational Sciences and Optimization, 2009

A (1+e)-Approximation Algorithm for Sorting by Short Block-Moves.

Haitao Jiang, Daming Zhu

Proceedings of the Second International Joint Conference on Computational Sciences and Optimization, 2009

Translocation-Deletions Distance Formula for Sorting Genomes.

Fanchang Hao, Junfeng Luan, Daming Zhu

Proceedings of the CSIE 2009, 2009 WRI World Congress on Computer Science and Information Engineering, March 31, 2009

2008

DNA Encoding Methods in the Field of DNA Computing.

Aili Han, Daming Zhu

Proceedings of the Computational Intelligence in Bioinformatics, 2008

A (1.5 + epsilon)-Approximation Algorithm for Unsigned Translocation Distance.

Yun Cui, Lusheng Wang, Daming Zhu, Xiaowen Liu

IEEE ACM Trans. Comput. Biol. Bioinform., 2008

On Constrained Facility Location Problems.

Wei-Lin Li, Peng Zhang, Daming Zhu

J. Comput. Sci. Technol., 2008

DNA solution based on sequence alignment to the Minimum Spanning Tree problem.

Aili Han, Daming Zhu, Jingchang Pan

Int. J. Bioinform. Res. Appl., 2008

A polynomial algorithm to compute the minimum degree spanning trees of directed acyclic graphs with applications to the broadcast problem.

Guohui Yao, Daming Zhu, Hengwu Li, Shaohan Ma

Discret. Math., 2008

Genome Rearrangement Algorithms for Unsigned Permutations with O(logn) Singletons.

Xiaowen Lou, Daming Zhu

Proceedings of the Theory and Applications of Models of Computation, 2008

New Evolutionary Subset: Application to Symbiotic Evolutionary Algorithm for Job-Shop Scheduling Problem.

Zhaofeng Su, Hongze Qiu, Daming Zhu, Haodi Feng

Proceedings of the Fourth International Conference on Natural Computation, 2008

A 2.25-Approximation Algorithm for Cut-and-Paste Sorting of Unsigned Circular Permutations.

Xiaowen Lou, Daming Zhu

Proceedings of the Computing and Combinatorics, 14th Annual International Conference, 2008

2007

Faster algorithms for sorting by transpositions and sorting by block interchanges.

Jianxing Feng, Daming Zhu

ACM Trans. Algorithms, 2007

A 1.75-approximation algorithm for unsigned translocation distance.

Yun Cui, Lusheng Wang, Daming Zhu

J. Comput. Syst. Sci., 2007

Algorithms for the Well-Drilling Layout Problem.

Aili Han, Daming Zhu, Shouqiang Wang, Meixia Qu

Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2007

Prediction of Protein Subcellular Locations by Combining K-Local Hyperplane Distance Nearest Neighbor.

Hong Liu, Haodi Feng, Daming Zhu

Proceedings of the Advanced Data Mining and Applications, Third International Conference, 2007

2006

On the complexity of unsigned translocation distance.

Daming Zhu, Lusheng Wang

Theor. Comput. Sci., 2006

DNA Computing Model for the Minimum Spanning Tree Problem.

Aili Han, Daming Zhu

Proceedings of the 8th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing (SYNASC 2006), 2006

Complexity Analysis for the HEWN Algorithm.

Aili Han, Daming Zhu

Proceedings of the Sixth International Conference on Intelligent Systems Design and Applications (ISDA 2006), 2006

A New DNA Encoding Method for Traveling Salesman Problem.

Aili Han, Daming Zhu

Proceedings of the Computational Intelligence and Bioinformatics, 2006

A New DNA-Based Approach to Solve the Maximum Weight Clique Problem.

Aili Han, Daming Zhu

Proceedings of the Computational Intelligence and Bioinformatics, 2006

DNA Encoding Method of Weight for Chinese Postman Problem.

Aili Han, Daming Zhu

Proceedings of the IEEE International Conference on Evolutionary Computation, 2006

2005

An <i>O</i>(<i>n</i>²) algorithm for signed translocation.

Lusheng Wang, Daming Zhu, Xiaowen Liu, Shaohan Ma

J. Comput. Syst. Sci., 2005

A New Pseudoknots Folding Algorithm for RNA Structure Prediction.

Hengwu Li, Daming Zhu

Proceedings of the Computing and Combinatorics, 11th Annual International Conference, 2005

An O(N²) algorithm for signed translocation problem.

Lusheng Wang, Daming Zhu, Xiaowen Liu, Shaohan Ma

Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005

2004

CTRD: a fast applet for computing signed translocation distance between genomes.

Wangsen Feng, Lusheng Wang, Daming Zhu

Bioinform., 2004

2001

Hardness and Methods to Solve CLIQUE.

Daming Zhu, Junfeng Luan, Shaohan Ma

J. Comput. Sci. Technol., 2001

1994

Analysis of the Convergency of Topology Preserving Neural Networks on Learning.

Daming Zhu, Shaohan Ma, Hongze Qiu

Proceedings of the Algorithms and Computation, 5th International Symposium, 1994