David R. Penas

According to our database, David R. Penas authored at least 18 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells.

Paul F. Lang, David R. Penas, Julio R. Banga, Daniel Weindl, Béla Novák

PLoS Comput. Biol., January, 2024

Parameter estimation in a whole-brain network model of epilepsy: Comparison of parallel global optimization solvers.

David R. Penas, Meysam Hashemi, Viktor K. Jirsa, Julio R. Banga

PLoS Comput. Biol., 2024

2023

Computational advances in polynomial optimization: RAPOSa, a freely available global solver.

Brais González-Rodríguez, Joaquín Ossorio-Castillo, Julio González-Díaz, Ángel Manuel González-Rueda, David R. Penas, Diego Rodríguez Martínez

J. Glob. Optim., March, 2023

Optimal evaluation of energy yield and driving force in microbial metabolic pathway variants.

Ahmed Taha, Mauricio Patón, David R. Penas, Julio R. Banga, Jorge Rodríguez

PLoS Comput. Biol., 2023

A new two-phase heuristic for a problem of food distribution with compartmentalized trucks and trailers.

Laura Davila-Pena, David R. Penas, Balbina Casas-Méndez

Int. Trans. Oper. Res., 2023

2020

A metaheuristic penalty approach for the starting point in nonlinear programming.

David R. Penas, Marcos Raydan

RAIRO Oper. Res., 2020

2019

Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology.

Patricia González, Pablo Argüeso-Alejandro, David R. Penas, Xoán C. Pardo, Julio Saez-Rodriguez, Julio R. Banga, Ramón Doallo

J. Supercomput., 2019

Enhanced global optimization methods applied to complex fisheries stock assessment models.

David R. Penas, Andrés Gómez, Basilio B. Fraguela, María J. Martín, Santiago Cerviño

Appl. Soft Comput., 2019

2018

Multimethod optimization in the cloud: A case-study in systems biology modelling.

Patricia González, David R. Penas, Xoán C. Pardo, Julio R. Banga, Ramón Doallo

Concurr. Comput. Pract. Exp., 2018

Multimethod Optimization for Reverse Engineering of Complex Biological Networks.

Patricia González, David R. Penas, Xoán C. Pardo, Julio R. Banga, Ramón Doallo

Proceedings of the 6th International Workshop on Parallelism in Bioinformatics, 2018

2017

A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology.

Diego Teijeiro, Xoán C. Pardo, David R. Penas, Patricia González, Julio R. Banga, Ramón Doallo

Clust. Comput., 2017

Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy.

David R. Penas, Patricia González, Jose A. Egea, Ramón Doallo, Julio R. Banga

BMC Bioinform., 2017

Using the Cloud for parameter estimation problems: comparing Spark vs MPI with a case-study.

Patricia González, Xoán C. Pardo, David R. Penas, Diego Teijeiro, Julio R. Banga, Ramón Doallo

Proceedings of the 17th IEEE/ACM International Symposium on Cluster, 2017

2016

Evaluation of Parallel Differential Evolution Implementations on MapReduce and Spark.

Diego Teijeiro, Xoán C. Pardo, David R. Penas, Patricia González, Julio R. Banga, Ramón Doallo

Proceedings of the Euro-Par 2016: Parallel Processing Workshops, 2016

2015

Enhanced parallel Differential Evolution algorithm for problems in computational systems biology.

David R. Penas, Julio R. Banga, Patricia González, Ramon Doallo

Appl. Soft Comput., 2015

Parallel Metaheuristics in Computational Biology: An Asynchronous Cooperative Enhanced Scatter Search Method.

David R. Penas, Patricia González, Jose A. Egea, Julio R. Banga, Ramon Doallo

Proceedings of the International Conference on Computational Science, 2015

2014

A Parallel Differential Evolution Algorithm for Parameter Estimation in Dynamic Models of Biological Systems.

David R. Penas, Julio R. Banga, Patricia González, Ramon Doallo

Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014

2012

A Study of Semantic Proximity between Archetype Terms Based on SNOMED CT Relationships.

José Luis Iglesias Allones, David R. Penas, Maria Taboada, Diego Martínez Hernández, Serafín Tellado

Proceedings of the Process Support and Knowledge Representation in Health Care, 2012