María J. Martín

Orcid: 0000-0002-9153-0909

According to our database1, María J. Martín authored at least 88 papers between 1994 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2022
Fiuncho: a program for any-order epistasis detection in CPU clusters.
J. Supercomput., 2022

Evaluation of Existing Methods for High-Order Epistasis Detection.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

The Quest for Orthologs orthology benchmark service in 2022.
Nucleic Acids Res., 2022

A SIMD algorithm for the detection of epistatic interactions of any order.
Future Gener. Comput. Syst., 2022

PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models.
BMC Bioinform., 2022

2020
Fast search of third-order epistatic interactions on CPU and GPU clusters.
Int. J. High Perform. Comput. Appl., 2020

Fault tolerance of MPI applications in exascale systems: The ULFM solution.
Future Gener. Comput. Syst., 2020

Toxo: a library for calculating penetrance tables of high-order epistasis models.
BMC Bioinform., 2020

2019
Local rollback for resilient MPI applications with application-level checkpointing and message logging.
Future Gener. Comput. Syst., 2019

Enhanced global optimization methods applied to complex fisheries stock assessment models.
Appl. Soft Comput., 2019

Analysis of the Construction of Similarity Matrices on Multi-core and Many-Core Platforms Using Different Similarity Metrics.
Proceedings of the Computational Science - ICCS 2019, 2019

2018
MPIGeneNet: Parallel Calculation of Gene Co-Expression Networks on Multicore Clusters.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Insights into Application-level Solutions towards Resilient MPI Applications.
Proceedings of the 2018 International Conference on High Performance Computing & Simulation, 2018

2017
Assessing resilient versus stop-and-restart fault-tolerant solutions in MPI applications.
J. Supercomput., 2017

Resilient MPI applications using an application-level checkpointing framework and ULFM.
J. Supercomput., 2017

A portable and adaptable fault tolerance solution for heterogeneous applications.
J. Parallel Distributed Comput., 2017

Parallel definition of tear film maps on distributed-memory clusters for the support of dry eye diagnosis.
Comput. Methods Programs Biomed., 2017

Evaluation of OpenMP SIMD Directives on Xeon Phi Coprocessors.
Proceedings of the 2017 International Conference on High Performance Computing & Simulation, 2017

Fast Parallel Construction of Correlation Similarity Matrices for Gene Co-Expression Networks on Multicore Clusters.
Proceedings of the International Conference on Computational Science, 2017

2016
Reducing the overhead of an MPI application-level migration approach.
Parallel Comput., 2016

Novel parallelization of simulated annealing and Hooke & Jeeves search algorithms for multicore systems with application to complex fisheries stock assessment models.
J. Comput. Sci., 2016

An Application-Level Solution for the Dynamic Reconfiguration of MPI Applications.
Proceedings of the High Performance Computing for Computational Science - VECPAR 2016, 2016

Portable Application-level Checkpointing for Hybrid MPI-OpenMP Applications.
Proceedings of the International Conference on Computational Science 2016, 2016

Acceleration of Tear Film Map Definition on Multicore Systems.
Proceedings of the International Conference on Computational Science 2016, 2016

2015
On Processing Extreme Data.
Scalable Comput. Pract. Exp., 2015

I/O Optimization in the Checkpointing of OpenMP Parallel Applications.
Proceedings of the 23rd Euromicro International Conference on Parallel, 2015

2014
A 2D algorithm with asymmetric workload for the UPC conjugate gradient method.
J. Supercomput., 2014

In-memory application-level checkpoint-based migration for MPI programs.
J. Supercomput., 2014

Analysis of the Protein Domain and Domain Architecture Content in Fungi and Its Application in the Search of New Antifungal Targets.
PLoS Comput. Biol., 2014

Extending an Application-Level Checkpointing Tool to Provide Fault Tolerance Support to OpenMP Applications.
J. Univers. Comput. Sci., 2014

Constructing Performance Models for Dense Linear Algebra Algorithms on Cray XE Systems.
CoRR, 2014

Failure Avoidance in MPI Applications Using an Application-Level Approach.
Comput. J., 2014

Improving an MPI Application-Level Migration Approach through Checkpoint File Splitting.
Proceedings of the 26th IEEE International Symposium on Computer Architecture and High Performance Computing, 2014

2013
Performance evaluation of sparse matrix products in UPC.
J. Supercomput., 2013

Improving Scalability of Application-Level Checkpoint-Recovery by Reducing Checkpoint Sizes.
New Gener. Comput., 2013

Compiler-Assisted Checkpointing of Parallel Codes: The Cetus and LLVM Experience.
Int. J. Parallel Program., 2013

The Servet 3.0 benchmark suite: Characterization of network performance degradation.
Comput. Electr. Eng., 2013

Achieving Checkpointing Global Consistency Through a Hybrid Compile Time and Runtime Protocol.
Proceedings of the International Conference on Computational Science, 2013

2012
Supervised Coursework as a Way of Improving Motivation in the Learning of Digital Electronics.
IEEE Trans. Educ., 2012

UPCBLAS: a library for parallel matrix computations in Unified Parallel C.
Concurr. Comput. Pract. Exp., 2012

Automatic mapping of parallel applications on multicore architectures using the Servet benchmark suite.
Comput. Electr. Eng., 2012

Design and Performance Issues of Cholesky and LU Solvers Using UPCBLAS.
Proceedings of the 10th IEEE International Symposium on Parallel and Distributed Processing with Applications, 2012

Reducing Application-level Checkpoint File Sizes: Towards Scalable Fault Tolerance Solutions.
Proceedings of the 10th IEEE International Symposium on Parallel and Distributed Processing with Applications, 2012

2011
Dense Triangular Solvers on Multicore Clusters using UPC.
Proceedings of the International Conference on Computational Science, 2011

Analysis of Performance-impacting Factors on Checkpointing Frameworks: The CPPC Case Study.
Comput. J., 2011

An Application Level Approach for Proactive Process Migration in MPI Applications.
Proceedings of the 12th International Conference on Parallel and Distributed Computing, 2011

Extending the Globus Information Service with the Common Information Model.
Proceedings of the IEEE International Symposium on Parallel and Distributed Processing with Applications, 2011

2010
Performance evaluation of an application-level checkpointing solution on grids.
Future Gener. Comput. Syst., 2010

CPPC: a compiler-assisted tool for portable checkpointing of message-passing applications.
Concurr. Comput. Pract. Exp., 2010

Achieving Fault Tolerance on Grids with the CPPC Framework and the GridWay Metascheduler.
Proceedings of the 22st International Symposium on Computer Architecture and High Performance Computing, 2010

Servet: A benchmark suite for autotuning on multicore clusters.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

2009
Teaching Digital Systems in the Context of the New European Higher Education Area: A Practical Experience.
IEEE Trans. Educ., 2009

A Heuristic Approach for the Automatic Insertion of Checkpoints in Message-Passing Codes.
J. Univers. Comput. Sci., 2009

A Parallel Numerical Library for UPC.
Proceedings of the Euro-Par 2009 Parallel Processing, 2009

2008
A Fault Tolerance Solution for Sequential and MPI Applications on the Grid.
Scalable Comput. Pract. Exp., 2008

Integrating the common information model with MDS4.
Proceedings of the 9th IEEE/ACM International Conference on Grid Computing (Grid 2008), Tsukuba, Japan, September 29, 2008

Application-Level Fault-Tolerance Solutions for Grid Computing.
Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 2008

2007
CPPC-G: Fault-Tolerant Applications on the Grid.
Proceedings of the Parallel Processing and Applied Mathematics, 2007

Fault-tolerant solutions for a MPI compute intensive application.
Proceedings of the 15th Euromicro International Conference on Parallel, 2007

Enhancing Fault-Tolerance of Large-Scale MPI Scientific Applications.
Proceedings of the Parallel Computing Technologies, 2007

2006
Controller/Precompiler for Portable Checkpointing.
IEICE Trans. Inf. Syst., 2006

High Performance Air Quality Simulation in the European CrossGrid Project.
Comput. Artif. Intell., 2006

Dynamic Load-Balancing for the STEM-II Air Quality Model.
Proceedings of the Computational Science and Its Applications, 2006

2005
A Grid Portal for an Undergraduate Parallel Programming Course.
IEEE Trans. Educ., 2005

Runtime characterisation of irregular accesses applied to parallelisation of irregular reductions.
Int. J. Comput. Sci. Eng., 2005

Modeling Execution Time of Selected Computation and Communication Kernels on Grids.
Proceedings of the Advances in Grid Computing, 2005

2004
High Performance Air Pollution Simulation Using OpenMP.
J. Supercomput., 2004

A Grid Portal to Support High-Performance Scientific Computing on Distributed Resources.
IEICE Trans. Inf. Syst., 2004

Air Pollution Modeling in the CrossGrid Project.
Proceedings of the Computational Science, 2004

2003
High performance air pollution modeling for a power plant environment.
Parallel Comput., 2003

Automatic Generation of Optimized Parallel Codes for N-body Simulations.
Proceedings of the Parallel Processing and Applied Mathematics, 2003

Increasing the Throughput of Available Resources Using Management Tools Based on Grid Technologies.
Proceedings of the 17th International Parallel and Distributed Processing Symposium (IPDPS 2003), 2003

Increasing the Parallelism of Irregular Loops with Dependences.
Proceedings of the Euro-Par 2003. Parallel Processing, 2003


2002
A Cluster-Based Solution for a High Performance Air Quality Simulation.
Proceedings of the Applied Parallel Computing Advanced Scientific Computing, 2002

Exploiting Locality in the Run-Time Parallelization of Irregular Loops.
Proceedings of the 31st International Conference on Parallel Processing (ICPP 2002), 2002

Improving Locality in the Parallelization of Doacross Loops (Research Note).
Proceedings of the Euro-Par 2002, 2002

2001
An lonised-impurity Scattering Model for 3D Monte Carlo Device Simulation with Discrete Impurity Distribution.
VLSI Design, 2001

Run-Time Characterization of Irregular Accesses Applied to Parallelization of Irregular Reductions.
Proceedings of the 30th International Workshops on Parallel Processing (ICPP 2001 Workshops), 2001

The STEM-II Air Quality Model on a Distributed Memory System.
Proceedings of the 30th International Workshops on Parallel Processing (ICPP 2001 Workshops), 2001

Parallelization of the STEM-II Air Quality Model.
Proceedings of the High-Performance Computing and Networking, 9th International Conference, 2001

2000
The Envelope of a Digital Curve Based on Dominant Points.
Proceedings of the Discrete Geometry for Computer Imagery, 9th International Conference, 2000

1999
Left-looking strategy for the sparse modified Cholesky factorization on NUMA multiprocessors.
Proceedings of the Parallel Computing: Fundamentals & Applications, 1999

Scheduling of Algorithms Based on Elimination Trees on NUMA Systems.
Proceedings of the Euro-Par '99 Parallel Processing, 5th International Euro-Par Conference, Toulouse, France, August 31, 1999

1997
Static Mapping of the Multifrontal Method Applied to the Modified Cholesky Factorization for Sparse Matrices.
Proceedings of the Parallel Computing: Fundamentals, 1997

Modelling an Asynchronous Parallel Modified Cholesky Factorization for Sparse Matrices.
Proceedings of the IASTED International Conference on Parallel and Distributed Systems, 1997

1995
Image Template Matching on Distributed Memory and Vector Multiprocessors.
Proceedings of the Parallel Computing: State-of-the-Art and Perspectives, 1995

1994
Vectorization of the Radix r Self-Sorting FFT.
Proceedings of the Parallel Processing: CONPAR 94, 1994


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