Julio R. Banga
Orcid: 0000-0002-4245-0320
According to our database1,
Julio R. Banga
authored at least 91 papers
between 2001 and 2024.
Collaborative distances:
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Bibliography
2024
Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells.
PLoS Comput. Biol., January, 2024
2023
PLoS Comput. Biol., October, 2023
IDESS: a toolbox for identification and automated design of stochastic gene circuits.
Bioinform., October, 2023
Bioinform., January, 2023
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of Biosystems.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
Optimal evaluation of energy yield and driving force in microbial metabolic pathway variants.
PLoS Comput. Biol., 2023
2022
Expert Syst. Appl., 2022
Appl. Soft Comput., 2022
2021
PEtab - Interoperable specification of parameter estimation problems in systems biology.
PLoS Comput. Biol., 2021
Structural identifiability and observability of compartmental models of the COVID-19 pandemic.
Annu. Rev. Control., 2021
2020
Spark implementation of the enhanced Scatter Search metaheuristic: Methodology and assessment.
Swarm Evol. Comput., 2020
Repairing dynamic models: a method to obtain identifiable and observable reparameterizations with mechanistic insights.
CoRR, 2020
2019
Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology.
J. Supercomput., 2019
IEEE Control. Syst. Lett., 2019
Parameter estimation in models of biological oscillators: an automated regularised estimation approach.
BMC Bioinform., 2019
Bioinform., 2019
2018
IEEE ACM Trans. Comput. Biol. Bioinform., 2018
J. Comput. Sci. Technol., 2018
Int. J. High Perform. Comput. Appl., 2018
Concurr. Comput. Pract. Exp., 2018
Optimality and identification of dynamic models in systems biology: an inverse optimal control framework.
Bioinform., 2018
Bioinform., 2018
Proceedings of the 6th International Workshop on Parallelism in Bioinformatics, 2018
2017
Dynamical compensation and structural identifiability of biological models: Analysis, implications, and reconciliation.
PLoS Comput. Biol., 2017
Data-driven reverse engineering of signaling pathways using ensembles of dynamic models.
PLoS Comput. Biol., 2017
Dynamical compensation and structural identifiability: analysis, implications, and reconciliation.
CoRR, 2017
Dynamical compensation in biological systems as a particular case of structural non-identifiability.
CoRR, 2017
A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology.
Clust. Comput., 2017
Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems.
BMC Syst. Biol., 2017
Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy.
BMC Bioinform., 2017
Using the Cloud for parameter estimation problems: comparing Spark vs MPI with a case-study.
Proceedings of the 17th IEEE/ACM International Symposium on Cluster, 2017
2016
Bioinform., 2016
Bioinform., 2016
Proceedings of the Applications of Evolutionary Computation - 19th European Conference, 2016
Evaluation of Parallel Differential Evolution Implementations on MapReduce and Spark.
Proceedings of the Euro-Par 2016: Parallel Processing Workshops, 2016
Proceedings of the Computational Methods in Systems Biology, 2016
2015
A consensus approach for estimating the predictive accuracy of dynamic models in biology.
Comput. Methods Programs Biomed., 2015
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology.
BMC Syst. Biol., 2015
BMC Syst. Biol., 2015
Optimal programs of pathway control: dissecting the influence of pathway topology and feedback inhibition on pathway regulation.
BMC Bioinform., 2015
BMC Bioinform., 2015
Reverse engineering of logic-based differential equation models using a mixed-integer dynamic optimization approach.
Bioinform., 2015
Enhanced parallel Differential Evolution algorithm for problems in computational systems biology.
Appl. Soft Comput., 2015
Parallel Metaheuristics in Computational Biology: An Asynchronous Cooperative Enhanced Scatter Search Method.
Proceedings of the International Conference on Computational Science, 2015
2014
CoRR, 2014
BMC Syst. Biol., 2014
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics.
BMC Bioinform., 2014
Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014
A Parallel Differential Evolution Algorithm for Parameter Estimation in Dynamic Models of Biological Systems.
Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014
Proceedings of the Computational Methods in Systems Biology, 2014
Improved Parameter Estimation in Kinetic Models: Selection and Tuning of Regularization Methods.
Proceedings of the Computational Methods in Systems Biology, 2014
2013
Reverse-Engineering Post-Transcriptional Regulation of Gap Genes in <i>Drosophila melanogaster</i>.
PLoS Comput. Biol., 2013
Int. J. Bifurc. Chaos, 2013
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics.
CoRR, 2013
Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems.
BMC Syst. Biol., 2013
Optimal regulatory programs for the control of metabolic pathways: The case of feedback inhibition.
Proceedings of the 21st Mediterranean Conference on Control and Automation, 2013
Proceedings of the Computational Methods in Systems Biology, 2013
2012
A cooperative strategy for parameter estimation in large scale systems biology models.
BMC Syst. Biol., 2012
Dynamic optimization of distributed biological systems using robust and efficient numerical techniques.
BMC Syst. Biol., 2012
CRNreals: a toolbox for distinguishability and identifiability analysis of biochemical reaction networks.
Bioinform., 2012
2011
Inference of complex biological networks: distinguishability issues and optimization-based solutions.
BMC Syst. Biol., 2011
GenSSI: a software toolbox for structural identifiability analysis of biological models.
Bioinform., 2011
AMIGO, a toolbox for advanced model identification in systems biology using global optimization.
Bioinform., 2011
2010
BMC Syst. Biol., 2010
SensSB: a software toolbox for the development and sensitivity analysis of systems biology models.
Bioinform., 2010
2009
Dynamic Optimization of Chemical and Bio-chemical Processes using an Efficient Global Optimization Metaheuristic.
Simul. Notes Eur., 2009
Improved scatter search for the global optimization of computationally expensive dynamic models.
J. Glob. Optim., 2009
Comput. Oper. Res., 2009
BMC Bioinform., 2009
2008
A Tabu search-based algorithm for mixed-integer nonlinear problems and its application to integrated process and control system design.
Comput. Chem. Eng., 2008
Hierarchical design of decentralized control structures for the Tennessee Eastman Process.
Comput. Chem. Eng., 2008
BMC Syst. Biol., 2008
Multi-Objective Optimization of Biological Networks for Prediction of Intracellular Fluxes.
Proceedings of the 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics, 2008
Proceedings of the 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics, 2008
2007
Comput. Chem. Eng., 2007
2006
Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems.
BMC Bioinform., 2006
Robust Parameter Estimation in a Model for Glucose Kinetics in Type 1 Diabetes Subjects.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
2005
State Reconstruction in Spatially Distributed BioProcess Systems using Reduced Order Models: Application to the Gluconic Acid Production.
Proceedings of the 44th IEEE IEEE Conference on Decision and Control and 8th European Control Conference Control, 2005
Global Optimization for Integrated Design and Control of Computationally Expensive Process Models.
Proceedings of the 44th IEEE IEEE Conference on Decision and Control and 8th European Control Conference Control, 2005
2004
Optimal sensor location and reduced order observer design for distributed process systems.
Comput. Chem. Eng., 2004
Appl. Soft Comput., 2004
2001
Integrated process design and control via global optimization: A wastewater treatment plant case study.
Proceedings of the 6th European Control Conference, 2001
Proceedings of the 6th European Control Conference, 2001