David W. Ritchie
Orcid: 0000-0002-0906-7354
According to our database1,
David W. Ritchie
authored at least 37 papers
between 1997 and 2021.
Collaborative distances:
Collaborative distances:
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Bibliography
2021
PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions.
PLoS Comput. Biol., 2021
2020
BMC Bioinform., 2020
2019
EROS-DOCK: protein-protein docking using exhaustive branch-and-bound rotational search.
Bioinform., 2019
Functional Annotation of Proteins using Domain Embedding based Sequence Classification.
Proceedings of the 11th International Joint Conference on Knowledge Discovery, 2019
2018
BMC Bioinform., 2018
Proceedings of the Complex Networks and Their Applications VII, 2018
2017
ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains.
BMC Bioinform., 2017
Proceedings of the Bioinformatics and Biomedical Engineering, 2017
2016
Kbdock - Searching and Organising the Structural Space of Protein-Protein Interactions.
ERCIM News, 2016
Bioinform., 2016
PEPSI-Dock: a detailed data-driven protein-protein interaction potential accelerated by polar Fourier correlation.
Bioinform., 2016
2015
J. Chem. Inf. Model., 2015
2014
Nucleic Acids Res., 2014
J. Chem. Inf. Model., 2014
2012
J. Chem. Inf. Model., 2012
Int. J. Swarm Intell. Res., 2012
Fast protein structure alignment using Gaussian overlap scoring of backbone peptide fragment similarity.
Bioinform., 2012
2011
Using Consensus-Shape Clustering To Identify Promiscuous Ligands and Protein Targets and To Choose the Right Query for Shape-Based Virtual Screening.
J. Chem. Inf. Model., 2011
Predicting drug polypharmacology using a novel surface property similarity-based approach.
J. Cheminformatics, 2011
Bioinform., 2011
Proceedings of the Pattern Recognition in Bioinformatics, 2011
Algorithmes Haute-Performance pour la Reconnaissance de Formes Moléculaires. (High Performance Algorithms for Molecular Shape Recognition).
, 2011
2010
Nucleic Acids Res., 2010
Comprehensive Comparison of Ligand-Based Virtual Screening Tools Against the DUD Data set Reveals Limitations of Current 3D Methods.
J. Chem. Inf. Model., 2010
3D-Blast: 3D Protein Structure Alignment, Comparison, and Classification Using Spherical Polar Fourier Correlations.
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010
Proceedings of the Healthgrid Applications and Core Technologies, 2010
Proceedings of the 3rd Eurographics Workshop on 3D Object Retrieval, 2010
2009
Discovery of Novel HIV Entry Inhibitors for the CXCR4 Receptor by Prospective Virtual Screening.
J. Chem. Inf. Model., 2009
2008
Comparison of Ligand-Based and Receptor-Based Virtual Screening of HIV Entry Inhibitors for the CXCR4 and CCR5 Receptors Using 3D Ligand Shape Matching and Ligand-Receptor Docking.
J. Chem. Inf. Model., 2008
Clustering and Classifying Diverse HIV Entry Inhibitors Using a Novel Consensus Shape-Based Virtual Screening Approach: Further Evidence for Multiple Binding Sites within the CCR5 Extracellular Pocket.
J. Chem. Inf. Model., 2008
Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions.
Bioinform., 2008
2007
Toward High Throughput 3D Virtual Screening Using Spherical Harmonic Surface Representations.
J. Chem. Inf. Model., 2007
2006
Modeling the Structural Basis of Human CCR5 Chemokine Receptor Function: From Homology Model Building and Molecular Dynamics Validation to Agonist and Antagonist Docking.
J. Chem. Inf. Model., 2006
1999
Fast computation, rotation, and comparison of low resolution spherical harmonic molecular surfaces.
J. Comput. Chem., 1999
1997
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997