Marie-Dominique Devignes
Orcid: 0000-0002-0399-8713
According to our database1,
Marie-Dominique Devignes
authored at least 54 papers
between 2002 and 2023.
Collaborative distances:
Collaborative distances:
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Bibliography
2023
FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards.
J. Biomed. Semant., December, 2023
2022
On the design of a similarity function for sparse binary data with application on protein function annotation.
Knowl. Based Syst., 2022
Singular Interface Dynamics of the SARS-CoV-2 Delta Variant Explained with Contact Perturbation Analysis.
J. Chem. Inf. Model., 2022
Inductive database to support iterative data mining: Application to biomarker analysis on patient data in the Fight-HF project.
J. Biomed. Informatics, 2022
A Semi-supervised Graph Deep Neural Network for Automatic Protein Function Annotation.
Proceedings of the Bioinformatics and Biomedical Engineering, 2022
2021
PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions.
PLoS Comput. Biol., 2021
An Approach to Identifying the Most Predictive and Discriminant Features in Supervised Classification Problems.
Proceedings of the Graph-Based Representation and Reasoning, 2021
2020
Proceedings of the Bioinformatics and Biomedical Engineering, 2020
Proceedings of the Fifthteenth International Conference on Concept Lattices and Their Applications, 2020
2018
BMC Bioinform., 2018
Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach.
Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, 2018
2017
ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains.
BMC Bioinform., 2017
Discovering associations between adverse drug events using pattern structures and ontologies.
J. Biomed. Semant., 2017
Proceedings of the Bioinformatics and Biomedical Engineering, 2017
2016
Kbdock - Searching and Organising the Structural Space of Protein-Protein Interactions.
ERCIM News, 2016
2014
Nucleic Acids Res., 2014
Bioinform., 2014
Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability.
Proceedings of the Data Integration in the Life Sciences - 10th International Conference, 2014
2013
Integrative relational Machine-Learning Approach for Understanding Drug Side-Effect Profiles.
BMC Bioinform., 2013
Proceedings of the CORIA 2013 - Conférence en Recherche d'Infomations et Applications, 2013
2012
Functional classification of genes using semantic distance and fuzzy clustering approach: evaluation with reference sets and overlap analysis.
Int. J. Comput. Biol. Drug Des., 2012
Proceedings of the Knowledge Discovery, Knowledge Engineering and Knowledge Management, 2012
Formal Concept Analysis for the Interpretation of Relational Learning Applied on 3D Protein-binding Sites.
Proceedings of the KDIR 2012 - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval, Barcelona, Spain, 4, 2012
2011
Bioinform., 2011
Use of Domain Knowledge for Dimension Reduction - Application to Mining of Drug Side Effects.
Proceedings of the KDIR 2011, 2011
Ontology-based functional classification of genes: Evaluation with reference sets and overlap analysis.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
2010
Nucleic Acids Res., 2010
Comparison of Three Preprocessing Filters Efficiency in Virtual Screening: Identification of New Putative LXRβ Regulators As a Test Case.
J. Chem. Inf. Model., 2010
BioRegistry: Automatic extraction of metadata for biological database retrieval and discovery.
Int. J. Metadata Semant. Ontologies, 2010
IntelliGO: a new vector-based semantic similarity measure including annotation origin.
BMC Bioinform., 2010
Connaissances de domaine et treillis de concepts pour l'exploration progressive de données complexes.
Proceedings of the IC 2010 : 21es Journées Ingénierie des Connaissances 2010 (Proceedings of the 21st French Knowledge Engineering Conference), 2010
Proceedings of the ECAI 2010, 2010
2009
Gene-disease relationship discovery based on model-driven data integration and database view definition.
Bioinform., 2009
Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle.
Proceedings of the Actes du XXVIIème Congrès INFORSID, Toulouse, France, 26-29 mai 2009, 2009
A KDD Approach for Designing Filtering Strategies to Improve Virtual Screening.
Proceedings of the KDIR 2009 - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval, Funchal, 2009
2008
BMC Bioinform., 2008
Role Assertion Analysis: a proposed method for ontology refinement through assertion learning.
Proceedings of the STAIRS 2008, 2008
BioRegistry: automatic extraction of metadata for biological database retrieval and discovery.
Proceedings of the iiWAS'2008, 2008
Proceedings of the Conceptual Structures: Knowledge Visualization and Reasoning, 2008
Proceedings of the ECAI 2008, 2008
Proceedings of the 21st International Workshop on Description Logics (DL2008), 2008
2007
Proceedings of the Web Information Systems Engineering - WISE 2007 Workshops, 2007
Traitement d'attributs inter-dépendants pour la recherche d'information par treillis.
Proceedings of the IC 2007: Ingénierie des connaissances 2007 (Proceedings of the 18th French Knowledge Engineering Conference), 2007
2006
Treillis de concepts et ontologies pour interroger l'annuaire de sources de données biologiques BioRegistry.
Ingénierie des Systèmes d Inf., 2006
Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary Testing.
Proceedings of the On the Move to Meaningful Internet Systems 2006: OTM 2006 Workshops, 2006
SNP-Converter: An Ontology-Based Solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies.
Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006
2005
Treillis de concepts et ontologies pour l'interrogation d'un annuaire de sources de données biologiques (BioRegistry).
Proceedings of the Actes du XXIIIème Congrès INFORSID, Grenoble, France, 24-27 mai, 2005, 2005
Proceedings of the Conceptual Structures: Common Semantics for Sharing Knowledge, 2005
Méthode sémantique pour la classification et l'iinterrogation de sources de données biologiques.
Proceedings of the Extraction des connaissances : Etat et perspectives (Ateliers de la conférence EGC'2005), 2005
Proceedings of the Computational Life Sciences, First International Symposium, 2005
2002
Ingénierie des Systèmes d Inf., 2002