Davide Chicco

Orcid: 0000-0001-9655-7142

Affiliations:
  • University of Toronto, Institute of Health Policy Management and Evaluation, ON, Canada


According to our database1, Davide Chicco authored at least 52 papers between 2010 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2024
Clinical Feature Ranking Based on Ensemble Machine Learning Reveals Top Survival Factors for Glioblastoma Multiforme.
J. Heal. Informatics Res., March, 2024

Ensemble machine learning reveals key features for diabetes duration from electronic health records.
PeerJ Comput. Sci., 2024

2023
Ten quick tips for fuzzy logic modeling of biomedical systems.
PLoS Comput. Biol., December, 2023

A statistical comparison between Matthews correlation coefficient (MCC), prevalence threshold, and Fowlkes-Mallows index.
J. Biomed. Informatics, August, 2023

Ten quick tips for computational analysis of medical images.
PLoS Comput. Biol., January, 2023

Signature literature review reveals AHCY, DPYSL3, and NME1 as the most recurrent prognostic genes for neuroblastoma.
BioData Min., January, 2023

The Matthews correlation coefficient (MCC) should replace the ROC AUC as the standard metric for assessing binary classification.
BioData Min., January, 2023

Ten simple rules for providing bioinformatics support within a hospital.
BioData Min., January, 2023

Ten quick tips for bioinformatics analyses using an Apache Spark distributed computing environment.
PLoS Comput. Biol., 2023

Ten quick tips for avoiding pitfalls in multi-omics data integration analyses.
PLoS Comput. Biol., 2023

Exploratory analysis of longitudinal data of patients with dementia through unsupervised techniques.
Proceedings of the 4th Italian Workshop on Artificial Intelligence for an Ageing Society co-located with 22nd International Conference of the Italian Association for Artificial Intelligence (AIxIA 2023), 2023

2022
Eleven quick tips for data cleaning and feature engineering.
PLoS Comput. Biol., December, 2022

Ten simple rules for organizing a special session at a scientific conference.
PLoS Comput. Biol., 2022

Nine quick tips for pathway enrichment analysis.
PLoS Comput. Biol., 2022

An Invitation to Greater Use of Matthews Correlation Coefficient in Robotics and Artificial Intelligence.
Frontiers Robotics AI, 2022

The ABC recommendations for validation of supervised machine learning results in biomedical sciences.
Frontiers Big Data, 2022

A brief survey of tools for genomic regions enrichment analysis.
Frontiers Bioinform., 2022

A Survey on Publicly Available Open Datasets Derived From Electronic Health Records (EHRs) of Patients with Neuroblastoma.
Data Sci. J., 2022

geoCancerPrognosticDatasetsRetriever: a bioinformatics tool to easily identify cancer prognostic datasets on Gene Expression Omnibus (GEO).
Bioinform., 2022

Towards a potential pan-cancer prognostic signature for gene expression based on probesets and ensemble machine learning.
BioData Min., 2022

2021
An Enhanced Random Forests Approach to Predict Heart Failure From Small Imbalanced Gene Expression Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

The coefficient of determination R-squared is more informative than SMAPE, MAE, MAPE, MSE and RMSE in regression analysis evaluation.
PeerJ Comput. Sci., 2021

Computational intelligence identifies alkaline phosphatase (ALP), alpha-fetoprotein (AFP), and hemoglobin levels as most predictive survival factors for hepatocellular carcinoma.
Health Informatics J., 2021

The Matthews correlation coefficient (MCC) is more reliable than balanced accuracy, bookmaker informedness, and markedness in two-class confusion matrix evaluation.
BioData Min., 2021

Data analytics and clinical feature ranking of medical records of patients with sepsis.
BioData Min., 2021

The Matthews Correlation Coefficient (MCC) is More Informative Than Cohen's Kappa and Brier Score in Binary Classification Assessment.
IEEE Access, 2021

The Benefits of the Matthews Correlation Coefficient (MCC) Over the Diagnostic Odds Ratio (DOR) in Binary Classification Assessment.
IEEE Access, 2021

A Machine Learning Analysis of Health Records of Patients With Chronic Kidney Disease at Risk of Cardiovascular Disease.
IEEE Access, 2021

Arterial Disease Computational Prediction and Health Record Feature Ranking Among Patients Diagnosed With Inflammatory Bowel Disease.
IEEE Access, 2021

An Ensemble Learning Approach for Enhanced Classification of Patients With Hepatitis and Cirrhosis.
IEEE Access, 2021

Siamese Neural Networks: An Overview.
Proceedings of the Artificial Neural Networks - Third Edition., 2021

2020
Machine learning can predict survival of patients with heart failure from serum creatinine and ejection fraction alone.
BMC Medical Informatics Decis. Mak., 2020

The MCC-F1 curve: a performance evaluation technique for binary classification.
CoRR, 2020

2019
Biological and Medical Ontologies: Protein Ontology (PRO).
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

2018
Novelty Indicator for Enhanced Prioritization of Predicted Gene Ontology Annotations.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Supervised deep learning embeddings for the prediction of cervical cancer diagnosis.
PeerJ Comput. Sci., 2018

2017
Ten quick tips for machine learning in computational biology.
BioData Min., 2017

2016
Ontology-Based Prediction and Prioritization of Gene Functional Annotations.
IEEE ACM Trans. Comput. Biol. Bioinform., 2016

2015
Software Suite for Gene and Protein Annotation Prediction and Similarity Search.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Computational algorithms to predict Gene Ontology annotations.
BMC Bioinform., 2015

Validation Pipeline for Computational Prediction of Genomics Annotations.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015

2014
Computational Prediction of Gene Functions through Machine Learning methods and Multiple Validation Procedures
PhD thesis, 2014

Latent Dirichlet Allocation based on Gibbs Sampling for gene function prediction.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2014

Extended Spearman and Kendall Coefficients for Gene Annotation List Correlation.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

Deep autoencoder neural networks for gene ontology annotation predictions.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
Weighting Scheme Methods for Enhanced Genomic Annotation Prediction.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2013

Enhanced probabilistic latent semantic analysis with weighting schemes to predict genomic annotations.
Proceedings of the 13th IEEE International Conference on BioInformatics and BioEngineering, 2013

A discrete optimization approach for SVD best truncation choice based on ROC curves.
Proceedings of the 13th IEEE International Conference on BioInformatics and BioEngineering, 2013

2012
Probabilistic Latent Semantic Analysis for prediction of Gene Ontology annotations.
Proceedings of the 2012 International Joint Conference on Neural Networks (IJCNN), 2012

2011
Semantically improved genome-wide prediction of Gene Ontology annotations.
Proceedings of the 11th International Conference on Intelligent Systems Design and Applications, 2011

Genomic Annotation Prediction Based on Integrated Information.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2011

2010
An intraday trading model based on Artificial Immune Systems.
Proceedings of the Neural Nets WIRN10, 2010


  Loading...