Marco Masseroli

According to our database1, Marco Masseroli authored at least 113 papers between 2000 and 2020.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Links

On csauthors.net:

Bibliography

2020
Matrix Factorization-based Technique for Drug Repurposing Predictions.
IEEE J. Biomed. Health Informatics, 2020

Search and comparison of (epi)genomic feature patterns in multiple genome browser tracks.
BMC Bioinform., 2020

Association rule mining to identify transcription factor interactions in genomic regions.
Bioinform., 2020

Hybrid Evolutionary Framework for Selection of Genes Predicting Breast Cancer Relapse.
Proceedings of the 2020 International Joint Conference on Neural Networks, 2020

2019
Integrative Bioinformatics.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Biological and Medical Ontologies: GO and GOA.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Biological and Medical Ontologies: Introduction.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Biological and Medical Ontologies: Protein Ontology (PRO).
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Biological and Medical Ontologies: Systems Biology Ontology (SBO).
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Biological and Medical Ontologies: Human Phenotype Ontology (HPO).
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Biological and Medical Ontologies: Disease Ontology (DO).
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data.
Bioinform., 2019

GenoSurf: metadata driven semantic search system for integrated genomic datasets.
Database J. Biol. Databases Curation, 2019

Analysis of Gene Regulatory Networks Inferred from ChIP-seq Data.
Proceedings of the Bioinformatics and Biomedical Engineering, 2019

Non-negative Matrix Tri-Factorization for Data Integration and Network-based Drug Repositioning.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2019

Network Modeling and Analysis of Normal and Cancer Gene Expression Data.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019

Evaluating Deep Semi-supervised Learning for Whole-Transcriptome Breast Cancer Subtyping.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019

De Novo Sequence-Based Method for ncRPI Prediction using Structural Information.
Proceedings of the 19th IEEE International Conference on Bioinformatics and Bioengineering, 2019

Using GMQL-Web for Querying, Downloading and Integrating Public with Private Genomic Datasets.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

Drug Repositioning Predictions by Non-Negative Matrix Tri-Factorization of Integrated Association Data.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018
Novelty Indicator for Enhanced Prioritization of Predicted Gene Ontology Annotations.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Modeling Gene Transcriptional Regulation by Means of Hyperplanes Genetic Clustering.
Proceedings of the 2018 International Joint Conference on Neural Networks, 2018

Demonstration of GenoMetric Query Language.
Proceedings of the 27th ACM International Conference on Information and Knowledge Management, 2018

Exposing and Characterizing Subpopulations of Distinctly Regulated Genes by K-Plane Regression.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2018

2017
Data Management for Heterogeneous Genomic Datasets.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Indexing Next-Generation Sequencing data.
Inf. Sci., 2017

Explorative visual analytics on interval-based genomic data and their metadata.
BMC Bioinform., 2017

TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas.
BMC Bioinform., 2017

MuSERA: Multiple Sample Enriched Region Assessment.
Briefings Bioinform., 2017

Analysis of metabolomic data: tools, current strategies and future challenges for omics data integration.
Briefings Bioinform., 2017

Data-Driven Genomic Computing: Making sense of Signals from the Genome.
Proceedings of the Selected Papers of the XIX International Conference on Data Analytics and Management in Data Intensive Domains (DAMDID/RCDL 2017), 2017

Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome.
Proceedings of the Data Analytics and Management in Data Intensive Domains, 2017

Scalable Genomic Data Management System on the Cloud.
Proceedings of the 2017 International Conference on High Performance Computing & Simulation, 2017

Conceptual Modeling for Genomics: Building an Integrated Repository of Open Data.
Proceedings of the Conceptual Modeling - 36th International Conference, 2017

Experiences in the Development of a Data Management System for Genomics.
Proceedings of the Data Management Technologies and Applications, 2017

2016
Pattern Similarity Search in Genomic Sequences.
IEEE Trans. Knowl. Data Eng., 2016

Integration and Querying of Genomic and Proteomic Semantic Annotations for Biomedical Knowledge Extraction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2016

Ontology-Based Search of Genomic Metadata.
IEEE ACM Trans. Comput. Biol. Bioinform., 2016

Ontology-Based Prediction and Prioritization of Gene Functional Annotations.
IEEE ACM Trans. Comput. Biol. Bioinform., 2016

Cross-organism learning method to discover new gene functionalities.
Comput. Methods Programs Biomed., 2016

BITS 2015: the annual meeting of the Italian Society of Bioinformatics.
BMC Bioinform., 2016

Looking for Similar Patterns in Genomic Sequences.
Proceedings of the 24th Italian Symposium on Advanced Database Systems, 2016

Biomolecular Annotation Integration and Querying to Help Unveiling New Biomedical Knowledge.
Proceedings of the Bioinformatics and Biomedical Engineering, 2016

Data Management for Next Generation Genomic Computing.
Proceedings of the 19th International Conference on Extending Database Technology, 2016

2015
Software Suite for Gene and Protein Annotation Prediction and Similarity Search.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Computational algorithms to predict Gene Ontology annotations.
BMC Bioinform., 2015

GenoMetric Query Language: a novel approach to large-scale genomic data management.
Bioinform., 2015

Using combined evidence from replicates to evaluate ChIP-seq peaks.
Bioinform., 2015

Validation Pipeline for Computational Prediction of Genomics Annotations.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015

2014
NETTAB 2012 on "Integrated Bio-Search".
BMC Bioinform., 2014

Explorative search of distributed bio-data to answer complex biomedical questions.
BMC Bioinform., 2014

Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information.
BMC Bioinform., 2014

Random Perturbations of Term Weighted Gene Ontology Annotations for Discovering Gene Unknown Functionalities.
Proceedings of the Knowledge Discovery, Knowledge Engineering and Knowledge Management, 2014

Discovering New Gene Functionalities from Random Perturbations of Known Gene Ontological Annotations.
Proceedings of the KDIR 2014 - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval, Rome, Italy, 21, 2014

Latent Dirichlet Allocation based on Gibbs Sampling for gene function prediction.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2014

Extended Spearman and Kendall Coefficients for Gene Annotation List Correlation.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

2013
Weighting Scheme Methods for Enhanced Genomic Annotation Prediction.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2013

Enhanced probabilistic latent semantic analysis with weighting schemes to predict genomic annotations.
Proceedings of the 13th IEEE International Conference on BioInformatics and BioEngineering, 2013

A discrete optimization approach for SVD best truncation choice based on ROC curves.
Proceedings of the 13th IEEE International Conference on BioInformatics and BioEngineering, 2013

Integrative warehousing of biomolecular information to support complex multi-topic queries for biomedical knowledge discovery.
Proceedings of the 13th IEEE International Conference on BioInformatics and BioEngineering, 2013

2012
Clinical Bioinformatics: challenges and opportunities.
BMC Bioinform., 2012

Probabilistic Latent Semantic Analysis for prediction of Gene Ontology annotations.
Proceedings of the 2012 International Joint Conference on Neural Networks (IJCNN), 2012

2011
Bio Search Computing: Bioinformatics web service integration for data-driven answering of complex Life Science questions.
Proceedings of the International Conference on Computational Science, 2011

Bio-Search Computing: Integration and global ranking of bioinformatics search results.
J. Integr. Bioinform., 2011

Semantically improved genome-wide prediction of Gene Ontology annotations.
Proceedings of the 11th International Conference on Intelligent Systems Design and Applications, 2011

Genomic Annotation Prediction Based on Integrated Information.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2011

Integration of Biomolecular Interaction Data in a Genomic and Proteomic Data Warehouse to Support Biomedical Knowledge Discovery.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2011

Multi-domain data search and retrieval: A service-oriented Life Science scenario.
Proceedings of the 24th IEEE International Symposium on Computer-Based Medical Systems, 2011

2010
Web Resources for Gene List Analysis in Biomedicine.
Proceedings of the Web-Based Applications in Healthcare and Biomedicine, 2010

Quality controls in integrative approaches to detect errors and inconsistencies in biological databases.
J. Integr. Bioinform., 2010

Bio-SeCo: Integration and Global Ranking of Biomedical Search Results.
Proceedings of the Search Computing, 2010

Search Computing: Integrating Ranked Data in the Life Sciences.
Proceedings of the Data Integration in the Life Sciences, 7th International Conference, 2010

Prediction of Gene Ontology Annotations Based on Gene Functional Clustering.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

Detection of Errors and Inconsistencies in Biomolecular Databases through Integrative Approaches and Quality Controls.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

2009
A Web-Based Tool for Cooperating Behaviors in Eating and Physical Activity Control.
Proceedings of the Annual Review of Cybertherapy and Telemedicine 2009, 2009

Extraction, integration and analysis of alternative splicing and protein structure distributed information.
BMC Bioinform., 2009

Search Computing and the Life Sciences.
Proceedings of the Search Computing: Challenges and Directions [outcome of the first SeCO Workshop on Search Computing Challenges and Directions, 2009

Integration and Mining of Genomic Annotations: Experiences and Perspectives in GFINDer Data Warehousing.
Proceedings of the Data Integration in the Life Sciences, 6th International Workshop, 2009

Anomaly-free Prediction of Gene Ontology Annotations Using Bayesian Networks.
Proceedings of the Ninth IEEE International Conference on Bioinformatics and Bioengineering, 2009

Data Mining Techniques for the Identification of Genes with Expression Levels Related to Breast Cancer Prognosis.
Proceedings of the Ninth IEEE International Conference on Bioinformatics and Bioengineering, 2009

2008
X-PAT: A Multiplatform Patient Referral Data Management System for Small Healthcare Institution Requirements.
IEEE Trans. Inf. Technol. Biomed., 2008

2007
Management and Analysis of Genomic Functional and Phenotypic Controlled Annotations to Support Biomedical Investigation and Practice.
IEEE Trans. Inf. Technol. Biomed., 2007

Data and web management research at Politecnico di Milano.
SIGMOD Rec., 2007

Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists.
BMC Bioinform., 2007

2006
He@lthCo-op: a web-based system to support distributed healthcare co-operative work.
Comput. Biol. Medicine, 2006

Using Gene Ontology and genomic controlled vocabularies to analyze high-throughput gene lists: Three tool comparison.
Comput. Biol. Medicine, 2006

Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease.
BMC Bioinform., 2006

A Web System for Management of Medical Informatics Courses at "Politecnico di Milano".
Proceedings of the AMIA 2006, 2006

PLARIS: a Web Framework for Offering Automatically Classified Biomedical Multimedia Resources.
Proceedings of the AMIA 2006, 2006

Genomic Functional Investigation through Statistical Analysis of Protein Families and Domains.
Proceedings of the AMIA 2006, 2006

GALCO: a Web-Based System for Biomedical Information Sharing.
Proceedings of the AMIA 2006, 2006

A Web-Based Multi-Database System Supporting Distributed Collaborative Management and Sharing of Microarray Experiment Information.
Proceedings of the AMIA 2006, 2006

2005
GFINDer: genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists.
Nucleic Acids Res., 2005

Genewebex: Gene Annotation Web Extraction, Aggregation, and Updating From Web-Interfaced Biomolecular Databanks.
Int. J. Softw. Eng. Knowl. Eng., 2005

Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists.
BMC Bioinform., 2005

MicroGen: a MIAME compliant web system for microarray experiment information and workflow management.
BMC Bioinform., 2005

Understanding Telecardiology Success and Pitfalls by a Systematic Review.
Proceedings of the Connecting Medical Informatics and Bio-Informatics - Proceedings of MIE 2005, 2005

The Ontological Lens: Zooming in and out from Genomic to Clinical Level.
Proceedings of the Biological and Medical Data Analysis, 6th International Symposium, 2005

Foreseeing Promising Bio-medical Findings for Effective Applications of Data Mining.
Proceedings of the Biological and Medical Data Analysis, 6th International Symposium, 2005

2004
GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining.
Nucleic Acids Res., 2004

MyWEST: My Web Extraction Software Tool for effective mining of annotations from web-based databanks.
Bioinform., 2004

GeneWebEx: Gene Annotation Web Extraction, Aggregation, and Updating from Web-Based Biomolecular Databanks.
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004

2003
The educational offer in Medical Informatics and Telemedicine at the Engineering Faculty of the Politecnico di Milano.
IEEE Trans. Educ., 2003

GAAS: Gene Array Analyzer Software for management, analysis and visualization of gene expression data.
Bioinform., 2003

A Colorimetric Characterization of the Raw Digital Data of the Visible Human Dataset Images.
Proceedings of the AMIA 2003, 2003

2002
Software Agents for Extracting, Aggregating, and Updating Data from Web Pages of Genomic Databanks.
Proceedings of the AMIA 2002, 2002

A Database-based Application for Management and Statistical Analysis of High-throughput Gene Expression Data.
Proceedings of the AMIA 2002, 2002

2001
Web Architecture for the Remote Browsing and Analysis of Distributed Medical Images and Data.
Proceedings of the MEDINFO 2001, 2001

Use of Web Server-Side Technologies for Making the Most of the Hardware Variety in Hospital Information Systems.
Proceedings of the AMIA 2001, 2001

2000
Java Interface to Human Anatomy Knowledge.
Proceedings of the 26th EUROMICRO 2000 Conference, 2000

Software Agents and Java Technology for Cardiology Data Retrieval and Visualization.
Proceedings of the AMIA 2000, 2000

Java Technology and BioImages: Towards Remote High Quality Medical Imaging.
Proceedings of the AMIA 2000, 2000

Remote access to anatomical information: an integration between semantic knowledge and visual data.
Proceedings of the AMIA 2000, 2000


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