Fabio Cumbo

According to our database, Fabio Cumbo authored at least 23 papers between 2016 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2026

hdlib 2.0: Extending Machine Learning Capabilities of Vector-Symbolic Architectures.

Fabio Cumbo, Kabir Dhillon, Daniel J. Blankenberg

CoRR, January, 2026

An Automatic Pipeline for the Integration of Python-Based Tools into the Galaxy Platform: Application to the anvi'o Framework.

Fabio Cumbo, Jayadev Joshi, Daniel J. Blankenberg

CoRR, January, 2026

Designing vector-symbolic architectures for biomedical applications: ten tips and common pitfalls.

Fabio Cumbo, Davide Chicco, Sercan Aygun, Daniel J. Blankenberg

PeerJ Comput. Sci., 2026

2025

Quantum Hyperdimensional Computing: a foundational paradigm for quantum neuromorphic architectures.

Fabio Cumbo, Rui-Hao Li, Bryan A. Raubenolt, Jayadev Joshi, Abu Kaisar Mohammad Masum, Sercan Aygun, Daniel J. Blankenberg

CoRR, November, 2025

Feature selection with vector-symbolic architectures: a case study on microbial profiles of shotgun metagenomic samples of colorectal cancer.

Fabio Cumbo, Simone Truglia, Emanuel Weitschek, Daniel J. Blankenberg

Briefings Bioinform., March, 2025

Hyperdimensional computing in biomedical sciences: a brief review.

Fabio Cumbo, Davide Chicco

PeerJ Comput. Sci., 2025

2023

An ontology-based approach for modelling and querying Alzheimer's disease data.

Francesco Taglino, Fabio Cumbo, Giulia Antognoli, Ivan Arisi, Mara D'Onofrio, Federico Perazzoni, Roger Voyat, Giulia Fiscon, Federica Conte, Marco Canevelli, Giuseppe Bruno, Patrizia Mecocci, Paola Bertolazzi

BMC Medical Informatics Decis. Mak., December, 2023

hdlib: A Python library for designing Vector-Symbolic Architectures.

Fabio Cumbo, Emanuel Weitschek, Daniel J. Blankenberg

J. Open Source Softw., October, 2023

Evaluating homophily in networks via <i>HONTO</i> (HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks.

Nicola Apollonio, Daniel J. Blankenberg, Fabio Cumbo, Paolo Giulio Franciosa, Daniele Santoni

Bioinform., January, 2023

Ten quick tips for avoiding pitfalls in multi-omics data integration analyses.

Davide Chicco, Fabio Cumbo, Claudio Angione

PLoS Comput. Biol., 2023

2020

OpenGDC.

Fabio Cumbo, Eleonora Cappelli, Anna Bernasconi, Arif Canakoglu, Stefano Ceri, Marco Masseroli, Emanuel Weitschek

Dataset, August, 2020

A Brain-Inspired Hyperdimensional Computing Approach for Classifying Massive DNA Methylation Data of Cancer.

Fabio Cumbo, Eleonora Cappelli, Emanuel Weitschek

Algorithms, 2020

An In-Memory Cognitive-Based Hyperdimensional Approach to Accurately Classify DNA-Methylation Data of Cancer.

Fabio Cumbo, Emanuel Weitschek

Proceedings of the Database and Expert Systems Applications, 2020

2019

Smart Persistence and Accessibility of Genomic and Clinical Data.

Eleonora Cappelli, Emanuel Weitschek, Fabio Cumbo

Proceedings of the Database and Expert Systems Applications, 2019

Extending Knowledge on Genomic Data and Metadata of Cancer by Exploiting Taxonomy-Based Relaxed Queries on Domain-Specific Ontologies.

Eleonora Cappelli, Emanuel Weitschek, Fabio Cumbo

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019

2018

IWTomics: testing high-resolution sequence-based 'Omics' data at multiple locations and scales.

Marzia A. Cremona, Alessia Pini, Fabio Cumbo, Kateryna D. Makova, Francesca Chiaromonte, Simone Vantini

Bioinform., 2018

Classification of Large DNA Methylation Datasets for Identifying Cancer Drivers.

Fabrizio Celli, Fabio Cumbo, Emanuel Weitschek

Big Data Res., 2018

Classifying Big DNA Methylation Data: A Gene-Oriented Approach.

Emanuel Weitschek, Fabio Cumbo, Eleonora Cappelli, Giovanni Felici, Paola Bertolazzi

Proceedings of the Database and Expert Systems Applications, 2018

An ontology-based approach to improve data querying and organization of Alzheimer's Disease data.

Ivan Arisi, Paola Bertolazzi, Eleonora Cappelli, Federica Conte, Fabio Cumbo, Giulia Fiscon, Michele Sonnessa, Francesco Taglino

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas.

Fabio Cumbo, Giulia Fiscon, Stefano Ceri, Marco Masseroli, Emanuel Weitschek

BMC Bioinform., 2017

2016

Genomic Data Integration: A Case Study on Next Generation Sequencing of Cancer.

Emanuel Weitschek, Fabio Cumbo, Eleonora Cappelli, Giovanni Felici

Proceedings of the 27th International Workshop on Database and Expert Systems Applications, 2016

IRIS-TCGA: An Information Retrieval and Integration System for Genomic Data of Cancer.

Fabio Cumbo, Emanuel Weitschek, Paola Bertolazzi, Giovanni Felici

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2016

COSYS: A Computational Infrastructure for Systems Biology.

Fabio Cumbo, Marco S. Nobile, Chiara Damiani, Riccardo Colombo, Giancarlo Mauri, Paolo Cazzaniga

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2016