Deepak Bandyopadhyay

According to our database, Deepak Bandyopadhyay authored at least 14 papers between 2001 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2019

Scaffold-Based Analytics: Enabling Hit-to-Lead Decisions by Visualizing Chemical Series Linked across Large Datasets.

Deepak Bandyopadhyay, Constantine Kreatsoulas, Pat G. Brady, Joseph Boyer, Zangdong He, Genaro Scavello, Tyler Peryea, Ajit Jadhav, Dac-Trung Nguyen, Rajarshi Guha

J. Chem. Inf. Model., 2019

2013

Stochastic Proximity Embedding: A Simple, Fast and Scalable Algorithm for Solving the Distance Geometry Problem.

Dimitris K. Agrafiotis, Deepak Bandyopadhyay, Eric Yang

Proceedings of the Distance Geometry: Theory, Methods, and Applications, 2013

2010

Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs.

Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha

IEEE Trans. Inf. Technol. Biomed., 2010

2009

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications.

Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha

J. Comput. Aided Mol. Des., 2009

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development.

Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha

J. Comput. Aided Mol. Des., 2009

2008

A self-organizing algorithm for molecular alignment and pharmacophore development.

Deepak Bandyopadhyay, Dimitris K. Agrafiotis

J. Comput. Chem., 2008

Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs.

Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007

Radial Clustergrams: Visualizing the Aggregate Properties of Hierarchical Clusters.

Dimitris K. Agrafiotis, Deepak Bandyopadhyay, Michael Farnum

J. Chem. Inf. Model., 2007

Almost-Delaunay simplices: Robust neighbor relations for imprecise 3D points using CGAL.

Deepak Bandyopadhyay, Jack Snoeyink

Comput. Geom., 2007

2005

Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs.

Jun Huan, Deepak Bandyopadhyay, Wei Wang, Jack Snoeyink, Jan F. Prins, Alexander Tropsha

J. Comput. Biol., 2005

2004

Almost-Delaunay simplices: nearest neighbor relations for imprecise points.

Deepak Bandyopadhyay, Jack Snoeyink

Proceedings of the Fifteenth Annual ACM-SIAM Symposium on Discrete Algorithms, 2004

Mining protein family specific residue packing patterns from protein structure graphs.

Jun Huan, Wei Wang, Deepak Bandyopadhyay, Jack Snoeyink, Jan F. Prins, Alexander Tropsha

Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

2001

Shader Lamps: Animating Real Objects With Image-Based Illumination.

Ramesh Raskar, Greg Welch, Kok-Lim Low, Deepak Bandyopadhyay

Proceedings of the 12th Eurographics Workshop on Rendering Techniques, 2001

Dynamic Shader Lamps: Painting on Movable Objects.

Deepak Bandyopadhyay, Ramesh Raskar, Henry Fuchs

Proceedings of the 4th International Symposium on Augmented Reality (ISAR 2001), 2001