Jan F. Prins

According to our database, Jan F. Prins authored at least 69 papers between 1982 and 2017.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2017

Improving Energy Efficiency in Memory-constrained Applications Using Core-specific Power Control.

Sridutt Bhalachandra, Allan Porterfield, Stephen L. Olivier, Jan F. Prins, Robert J. Fowler

Proceedings of the 5th International Workshop on Energy Efficient Supercomputing, 2017

E Pluribus Unum: United States of Single Cells.

Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins

Proceedings of the Research in Computational Molecular Biology, 2017

The Economic Case for Cloud-Based Computation for Robot Motion Planning.

Jeffrey Ichnowski, Jan F. Prins, Ron Alterovitz

Proceedings of the Robotics Research, The 18th International Symposium, 2017

An Adaptive Core-Specific Runtime for Energy Efficiency.

Sridutt Bhalachandra, Allan Porterfield, Stephen L. Olivier, Jan F. Prins

Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium, 2017

Performance and Scalability Study of FMM Kernels on Novel Multi- and Many-core Architectures.

Antón Rey, Francisco D. Igual, Manuel Prieto-Matías, Jan F. Prins

Proceedings of the International Conference on Computational Science, 2017

2016

Cloud-based Motion Plan Computation for Power-Constrained Robots.

Jeffrey Ichnowski, Jan F. Prins, Ron Alterovitz

Proceedings of the Algorithmic Foundations of Robotics XII, 2016

Asynchronous In Situ Connected-Components Analysis for Complex Fluid flows.

James E. McClure, Mark A. Berrill, Jan F. Prins, Cass T. Miller

Proceedings of the Second Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, 2016

SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data.

Joshua D. Welch, Ziqing Liu, Li Wang, Junjie Lu, Paul Lerou, Jeremy E. Purvis, Li Qian, Alexander J. Hartemink, Jan F. Prins

Proceedings of the Research in Computational Molecular Biology - 20th Annual Conference, 2016

2015

Using Dynamic Duty Cycle Modulation to Improve Energy Efficiency in High Performance Computing.

Sridutt Bhalachandra, Allan Porterfield, Jan F. Prins

Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015

2014

A novel heterogeneous algorithm to simulate multiphase flow in porous media on multicore CPU-GPU systems.

James E. McClure, Jan F. Prins, Cass T. Miller

Comput. Phys. Commun., 2014

Petascale Application of a Coupled CPU-GPU Algorithm for Simulation and Analysis of Multiphase Flow Solutions in Porous Medium Systems.

James E. McClure, Hao Wang, Jan F. Prins, Cass T. Miller, Wu-chun Feng

Proceedings of the 2014 IEEE 28th International Parallel and Distributed Processing Symposium, 2014

Cache-aware asymptotically-optimal sampling-based motion planning.

Jeffrey Ichnowski, Jan F. Prins, Ron Alterovitz

Proceedings of the 2014 IEEE International Conference on Robotics and Automation, 2014

2013

Characterizing and mitigating work time inflation in task parallel programs.

Stephen L. Olivier, Bronis R. de Supinski, Martin Schulz, Jan F. Prins

Sci. Program., 2013

A Robust Method for Transcript Quantification with RNA-Seq Data.

Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang, Yufeng Liu, Jan F. Prins, Jinze Liu

J. Comput. Biol., 2013

Power Measurement and Concurrency Throttling for Energy Reduction in OpenMP Programs.

Allan Porterfield, Stephen L. Olivier, Sridutt Bhalachandra, Jan F. Prins

Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

Dynamic Load Balancing of the Adaptive Fast Multipole Method in Heterogeneous Systems.

Robert E. Overman, Jan F. Prins, Laura A. Miller, Michael L. Minion

Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

2012

OpenMP task scheduling strategies for multicore NUMA systems.

Stephen Olivier, Allan Porterfield, Kyle B. Wheeler, Michael Spiegel, Jan F. Prins

Int. J. High Perform. Comput. Appl., 2012

2011

FDM: a graph-based statistical method to detect differential transcription using RNA-seq data.

Darshan Singh, Christian F. Orellana, Yin Hu, Corbin D. Jones, Yufeng Liu, Derek Y. Chiang, Jinze Liu, Jan F. Prins

Bioinform., 2011

2010

Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs.

Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha

IEEE Trans. Inf. Technol. Biomed., 2010

Comparison of OpenMP 3.0 and Other Task Parallel Frameworks on Unbalanced Task Graphs.

Stephen Olivier, Jan F. Prins

Int. J. Parallel Program., 2010

A probabilistic framework for aligning paired-end RNA-seq data.

Yin Hu, Kai Wang, Xiaping He, Derek Y. Chiang, Jan F. Prins, Jinze Liu

Bioinform., 2010

2009

High Performance Computing with the Cell Broadband Engine.

Michael Gschwind, Fred G. Gustavson, Jan F. Prins

Sci. Program., 2009

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications.

Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha

J. Comput. Aided Mol. Des., 2009

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development.

Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha

J. Comput. Aided Mol. Des., 2009

Evaluating OpenMP 3.0 Run Time Systems on Unbalanced Task Graphs.

Stephen Olivier, Jan F. Prins

Proceedings of the Evolving OpenMP in an Age of Extreme Parallelism, 2009

2008

A message passing benchmark for unbalanced applications.

James Dinan, Stephen Olivier, Gerald Sabin, Jan F. Prins, P. Sadayappan, Chau-Wen Tseng

Simul. Model. Pract. Theory, 2008

Genotype Sequence Segmentation: Handling Constraints and Noise.

Qi Zhang, Wei Wang, Leonard McMillan, Jan F. Prins, Fernando Pardo-Manuel de Villena, David Threadgill

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

Scalable Dynamic Load Balancing Using UPC.

Stephen Olivier, Jan F. Prins

Proceedings of the 2008 International Conference on Parallel Processing, 2008

Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs.

Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007

PoClustering: Lossless Clustering of Dissimilarity Data.

Jinze Liu, Qi Zhang, Wei Wang, Leonard McMillan, Jan F. Prins

Proceedings of the Seventh SIAM International Conference on Data Mining, 2007

Porting the GROMACS Molecular Dynamics Code to the Cell Processor.

Stephen Olivier, Jan F. Prins, Jeff Derby, Ken V. Vu

Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Dynamic Load Balancing of Unbalanced Computations Using Message Passing.

James Dinan, Stephen Olivier, Gerald Sabin, Jan F. Prins, P. Sadayappan, Chau-Wen Tseng

Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

2006

Local Structure Comparison of Proteins.

Jun Huan, Jan F. Prins, Wei Wang

Adv. Comput., 2006

Mining Approximate Frequent Itemsets In the Presence of Noise: Algorithm and Analysis.

Jinze Liu, Susan Paulsen, Xing Sun, Wei Wang, Andrew B. Nobel, Jan F. Prins

Proceedings of the Sixth SIAM International Conference on Data Mining, 2006

UTS: An Unbalanced Tree Search Benchmark.

Stephen Olivier, Jun Huan, Jinze Liu, Jan F. Prins, James Dinan, P. Sadayappan, Chau-Wen Tseng

Proceedings of the Languages and Compilers for Parallel Computing, 2006

Clustering pair-wise dissimilarity data into partially ordered sets.

Jinze Liu, Qi Zhang, Wei Wang, Leonard McMillan, Jan F. Prins

Proceedings of the Twelfth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2006

2005

Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs.

Jun Huan, Deepak Bandyopadhyay, Wei Wang, Jack Snoeyink, Jan F. Prins, Alexander Tropsha

J. Comput. Biol., 2005

Mining Approximate Frequent Itemsets from Noisy Data.

Jinze Liu, Susan Paulsen, Wei Wang, Andrew B. Nobel, Jan F. Prins

Proceedings of the 5th IEEE International Conference on Data Mining (ICDM 2005), 2005

2004

Mining protein family specific residue packing patterns from protein structure graphs.

Jun Huan, Wei Wang, Deepak Bandyopadhyay, Jack Snoeyink, Jan F. Prins, Alexander Tropsha

Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

Accurate Classification of Protein Structural Families Using Coherent Subgraph Analysis.

Jun Huan, Wei Wang, Anglina Washington, Jan F. Prins, Ruchir Shah, Alexander Tropsha

Proceedings of the Biocomputing 2004, 2004

SPIN: mining maximal frequent subgraphs from graph databases.

Jun Huan, Wei Wang, Jan F. Prins, Jiong Yang

Proceedings of the Tenth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2004

2003

Evaluating the Impact of Programming Language Features on the Performance of Parallel Applications on Cluster Architectures.

Konstantin Berlin, Jun Huan, Mary Jacob, Garima Kochhar, Jan F. Prins, William W. Pugh, P. Sadayappan, Jaime Spacco, Chau-Wen Tseng

Proceedings of the Languages and Compilers for Parallel Computing, 2003

Efficient Mining of Frequent Subgraphs in the Presence of Isomorphism.

Jun Huan, Wei Wang, Jan F. Prins

Proceedings of the 3rd IEEE International Conference on Data Mining (ICDM 2003), 2003

Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss.

Jun Huan, Jan F. Prins, Wei Wang, Todd J. Vision

Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2000

A Design Methodology for Data-Parallel Applications.

Lars S. Nyland, Jan F. Prins, Allen Goldberg, Peter Mills

IEEE Trans. Software Eng., 2000

Flattening Is an Improvement.

James Riely, Jan F. Prins

Proceedings of the Static Analysis, 7th International Symposium, 2000

1999

Irregular computations in Fortran - expression and implementation strategies.

Jan F. Prins, Siddhartha Chatterjee, Martin Simons

Sci. Program., 1999

A virtual environment for steered molecular dynamics.

Jan F. Prins, Jan Hermans, Geoffrey Mann, Lars S. Nyland, Martin Simons

Future Gener. Comput. Syst., 1999

1998

Expressing Irregular Computations in Modern Fortran Dialects.

Jan F. Prins, Siddhartha Chatterjee, Martin Simons

Proceedings of the Languages, 1998

Modeling Dynamic Load Balancing in Molecular Dynamics to Achieve Scalable Parallel Execution.

Lars S. Nyland, Jan F. Prins, Ru Huai Yun, Jan Hermans, Hye-Chung Kum, Lei Wang

Proceedings of the Solving Irregularly Structured Problems in Parallel, 1998

1997

Achieving Scalable Parallel Molecular Dynamics Using Dynamic Spatial Domain Decomposition Techniques.

Lars S. Nyland, Jan F. Prins, Ru Huai Yun, Jan Hermans, Hye-Chung Kum, Lei Wang

J. Parallel Distributed Comput., 1997

KHEPERA: A System for Rapid Implementation of Domain Specific Languages.

Rickard E. Faith, Lars S. Nyland, Jan F. Prins

Proceedings of the Conference on Domain-Specific Languages, 1997

1996

A Refinement Methodology for Developing Data-Parallel Applications.

Lars S. Nyland, Jan F. Prins, Allen Goldberg, Peter Mills, John H. Reif, Robert A. Wagner

Proceedings of the Euro-Par '96 Parallel Processing, 1996

1995

Piecewise Execution of Nested Data-Parallel Programs.

Daniel W. Palmer, Jan F. Prins, Siddhartha Chatterjee, Rickard E. Faith

Proceedings of the Languages and Compilers for Parallel Computing, 1995

1994

Specification and Development of Parallel Algorithms with the Proteus System.

Allen Goldberg, Peter Mills, Lars S. Nyland, Jan F. Prins, John H. Reif, James Riely

Proceedings of the Specification of Parallel Algorithms, 1994

Connected components algorithms for mesh-connected parallel computers.

Steve Goddard, Subodh Kumar, Jan F. Prins

Proceedings of the Parallel Algorithms, 1994

1993

Transforming High-Level Data-Parallel Programs into Vector Operations.

Jan F. Prins, Daniel W. Palmer

Proceedings of the Fourth ACM SIGPLAN Symposium on Principles & Practice of Parallel Programming (PPOPP), 1993

1992

Implementations of Randomized Sorting on Large Parallel Machines.

William L. Hightower, Jan F. Prins, John H. Reif

Proceedings of the 4th Annual ACM Symposium on Parallel Algorithms and Architectures, 1992

Prototyping N-Body Simulation in Proteus.

Peter Mills, Lars S. Nyland, Jan F. Prins, John H. Reif

Proceedings of the 6th International Parallel Processing Symposium, 1992

1991

Prototyping parallel and distributed programs in Proteus.

Peter Mills, Lars S. Nyland, Jan F. Prins, John H. Reif, Robert A. Wagner

Proceedings of the Third IEEE Symposium on Parallel and Distributed Processing, 1991

1989

Integrating Noninterfering Versions of Programs.

Susan Horwitz, Jan F. Prins, Thomas W. Reps

ACM Trans. Program. Lang. Syst., 1989

1988

Support for Integrating Program Variants in an Environment for Programming in the Large.

Thomas W. Reps, Susan Horwitz, Jan F. Prins

Proceedings of the International Workshop on Software Version and Configuration Control, 1988

On the Adequacy of Program Dependence Graphs for Representing Programs.

Susan Horwitz, Jan F. Prins, Thomas W. Reps

Proceedings of the Conference Record of the Fifteenth Annual ACM Symposium on Principles of Programming Languages, 1988

Integrating Non-Interfering Versions of Programs.

Susan Horwitz, Jan F. Prins, Thomas W. Reps

Proceedings of the Conference Record of the Fifteenth Annual ACM Symposium on Principles of Programming Languages, 1988

1987

Partial Implementations in Program Derivation.

Jan F. Prins

PhD thesis, 1987

McLaren's Masterpiece.

David Gries, Jan F. Prins

Sci. Comput. Program., 1987

1985

A new notion of encapsulation.

David Gries, Jan F. Prins

Proceedings of the ACM SIGPLAN 85 Symposium on Language Issues in Programming Environments, 1985

1982

Monte Carlo techniques in code optimization.

Dean Jacobs, Jan F. Prins, Peter Siegel, Kenneth Wilson

Proceedings of the 15th annual workshop on Microprogramming, 1982

Automated testing in APL - an application of exception handling.

Jan F. Prins

Proceedings of the international conference on APL, 1982