Desmond G. Higgins

According to our database1, Desmond G. Higgins authored at least 41 papers between 1987 and 2020.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 





QuanTest2: benchmarking multiple sequence alignments using secondary structure prediction.
Bioinform., 2020

Protein multiple sequence alignment benchmarking through secondary structure prediction.
Bioinform., 2017

ProViz - a web-based visualization tool to investigate the functional and evolutionary features of protein sequences.
Nucleic Acids Res., 2016

Using <i>de novo</i> protein structure predictions to measure the quality of very large multiple sequence alignments.
Bioinform., 2016

OD-seq: outlier detection in multiple sequence alignments.
BMC Bioinform., 2015

Instability in progressive multiple sequence alignment algorithms.
Algorithms Mol. Biol., 2015

GWIPS-viz: development of a ribo-seq genome browser.
Nucleic Acids Res., 2014

Systematic exploration of guide-tree topology effects for small protein alignments.
BMC Bioinform., 2014

Making automated multiple alignments of very large numbers of protein sequences.
Bioinform., 2013

Detecting microRNA activity from gene expression data.
BMC Bioinform., 2010

Sequence embedding for fast construction of guide trees for multiple sequence alignment.
Algorithms Mol. Biol., 2010

R-Coffee: a web server for accurately aligning noncoding RNA sequences.
Nucleic Acids Res., 2008

Distinct Patterns in the Regulation and Evolution of Human Cancer Genes.
Silico Biol., 2008

Fast embedding methods for clustering tens of thousands of sequences.
Comput. Biol. Chem., 2008

The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.
Nucleic Acids Res., 2007

Supervised multivariate analysis of sequence groups to identify specificity determining residues.
BMC Bioinform., 2007

Clustal W and Clustal X version 2.0.
Bioinform., 2007

Integrating transcription factor binding site information with gene expression datasets.
Bioinform., 2007

Analysis and Comparison of Benchmarks for Multiple Sequence Alignment.
Silico Biol., 2006

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.
BMC Bioinform., 2006

APDB: a web server to evaluate the accuracy of sequence alignments using structural information.
Bioinform., 2006

Evaluation of iterative alignment algorithms for multiple alignment.
Bioinform., 2005

MADE4: an R package for multivariate analysis of gene expression data.
Bioinform., 2005

Multiple sequence alignment with the Clustal series of programs.
Nucleic Acids Res., 2003

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.
BMC Bioinform., 2003

APDB: a novel measure for benchmarking sequence alignment methods without reference alignments.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

A SAT-Based Approach to Multiple Sequence Alignment.
Proceedings of the Principles and Practice of Constraint Programming, 2003

Between-group analysis of microarray data.
Bioinform., 2002

MIAH: automatic alignment of eukaryotic SSU rRNAs.
Bioinform., 1999

Optimization of ribosomal RNA profile alignments.
Bioinform., 1998

Empirical estimation of the reliability of ribosomal RNA alignments.
Bioinform., 1998

COFFEE: an objective function for multiple sequence alignments.
Bioinform., 1998

Improved sensitivity of profile searches through the use of sequence weights and gap excision.
Comput. Appl. Biosci., 1994

The EMBL data library.
Nucleic Acids Res., 1993

GCWIND: a microcomputer program for identifying open reading frames according to codon positional G+C content.
Comput. Appl. Biosci., 1992

EMBLSCAN: fast approximate DNA database searches on compact disc.
Comput. Appl. Biosci., 1992

CLUSTAL V: improved software for multiple sequence alignment.
Comput. Appl. Biosci., 1992

Sequence ordinations: a multivariate analysis approach to analysing large sequence data sets.
Comput. Appl. Biosci., 1992

OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity.
Comput. Appl. Biosci., 1992

Fast and sensitive multiple sequence alignments on a microcomputer.
Comput. Appl. Biosci., 1989

Interfacing similarity search software with the sequence retrieval system ACNUC.
Comput. Appl. Biosci., 1987