Ioannis Xenarios
Orcid: 0000-0002-3413-6841
According to our database1,
Ioannis Xenarios
authored at least 62 papers
between 2000 and 2022.
Collaborative distances:
Collaborative distances:
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Bibliography
2022
PLoS Comput. Biol., September, 2022
Bioinform., 2022
2021
Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
Briefings Bioinform., 2021
2020
Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region.
Bioinform., 2020
Bioinform., 2020
2019
An enhanced workflow for variant interpretation in UniProtKB/Swiss-Prot improves consistency and reuse in ClinVar.
Database J. Biol. Databases Curation, 2019
2018
Scaling up data curation using deep learning: An application to literature triage in genomic variation resources.
PLoS Comput. Biol., 2018
Expert curation for building network-based dynamical models: a case study on atherosclerotic plaque formation.
Database J. Biol. Databases Curation, 2018
Proceedings of the 28th International Conference on Field Programmable Logic and Applications, 2018
2017
Nucleic Acids Res., 2017
Nucleic Acids Res., 2017
Proceedings of the 12th Annual International Conference of the Alliance of Digital Humanities Organizations, 2017
2016
Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method.
BMC Bioinform., 2016
Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges.
Database J. Biol. Databases Curation, 2016
Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource.
Database J. Biol. Databases Curation, 2016
2015
Angiogenic Activity of Breast Cancer Patients' Monocytes Reverted by Combined Use of Systems Modeling and Experimental Approaches.
PLoS Comput. Biol., 2015
Nucleic Acids Res., 2015
Nucleic Acids Res., 2015
Nucleic Acids Res., 2015
Bioinform., 2015
2014
PLoS Comput. Biol., 2014
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.
Nucleic Acids Res., 2014
The EMPRES-i genetic module: a novel tool linking epidemiological outbreak information and genetic characteristics of influenza viruses.
Database J. Biol. Databases Curation, 2014
Briefings Bioinform., 2014
2013
HAMAP in 2013, new developments in the protein family classification and annotation system.
Nucleic Acids Res., 2013
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
BMC Syst. Biol., 2013
Application of text-mining for updating protein post-translational modification annotation in UniProtKB.
BMC Bioinform., 2013
Bioinform., 2013
Density-based hierarchical clustering of pyro-sequences on a large scale - the case of fungal ITS1.
Bioinform., 2013
Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model.
Bioinform., 2013
2012
Nucleic Acids Res., 2012
Nucleic Acids Res., 2012
Database J. Biol. Databases Curation, 2012
2011
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.
Nucleic Acids Res., 2011
Nucleic Acids Res., 2011
A qualitative continuous model of cellular auxin and brassinosteroid signaling and their crosstalk.
Bioinform., 2011
Bioinform., 2011
Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees.
Briefings Bioinform., 2011
2010
FastEpistasis: a high performance computing solution for quantitative trait epistasis.
Bioinform., 2010
Database J. Biol. Databases Curation, 2010
Database J. Biol. Databases Curation, 2010
2009
BMC Bioinform., 2009
AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context.
Bioinform., 2009
2008
Nucleic Acids Res., 2008
Bioinform., 2008
2007
An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and <i>in silico</i> Gene Perturbation Experiments.
Proceedings of the Research in Computational Molecular Biology, 2007
2002
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions.
Nucleic Acids Res., 2002
2001
2000