Dionisios G. Vlachos

According to our database1, Dionisios G. Vlachos authored at least 13 papers between 2005 and 2020.

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Bibliography

2020
Reaction Network Viewer (ReNView): An open-source framework for reaction path visualization of chemical reaction systems.
SoftwareX, 2020

Thermochemical Data Fusion Using Graph Representation Learning.
J. Chem. Inf. Model., 2020

A Python Multiscale Thermochemistry Toolbox (pMuTT) for thermochemical and kinetic parameter estimation.
Comput. Phys. Commun., 2020

2014
A robust and efficient triangulation-based optimization algorithm for stochastic black-box systems.
Comput. Chem. Eng., 2014

2013
Parametric sensitivity analysis for biochemical reaction networks based on pathwise information theory.
BMC Bioinform., 2013

2012
Efficient gradient estimation using finite differencing and likelihood ratios for kinetic Monte Carlo simulations.
J. Comput. Phys., 2012

Multilevel coarse graining and nano-pattern discovery in many particle stochastic systems.
J. Comput. Phys., 2012

2011
Long-time integration methods for mesoscopic models of pattern-forming systems.
J. Comput. Phys., 2011

Equivalence of on-lattice stochastic chemical kinetics with the well-mixed chemical master equation in the limit of fast diffusion.
Comput. Chem. Eng., 2011

2010
Adaptive coarse-grained Monte Carlo simulation of reaction and diffusion dynamics in heterogeneous plasma membranes.
BMC Bioinform., 2010

Parallelization of tau-leap coarse-grained Monte Carlo simulations on GPUs.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

2007
A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks.
BMC Bioinform., 2007

2005
Time accelerated Monte Carlo simulations of biological networks using the binomial r-leap method.
Bioinform., 2005


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