Dionisios G. Vlachos
According to our database^{1},
Dionisios G. Vlachos
authored at least 13 papers
between 2005 and 2020.
Collaborative distances:
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Bibliography
2020
Reaction Network Viewer (ReNView): An opensource framework for reaction path visualization of chemical reaction systems.
SoftwareX, 2020
J. Chem. Inf. Model., 2020
A Python Multiscale Thermochemistry Toolbox (pMuTT) for thermochemical and kinetic parameter estimation.
Comput. Phys. Commun., 2020
2014
A robust and efficient triangulationbased optimization algorithm for stochastic blackbox systems.
Comput. Chem. Eng., 2014
2013
Parametric sensitivity analysis for biochemical reaction networks based on pathwise information theory.
BMC Bioinform., 2013
2012
Efficient gradient estimation using finite differencing and likelihood ratios for kinetic Monte Carlo simulations.
J. Comput. Phys., 2012
Multilevel coarse graining and nanopattern discovery in many particle stochastic systems.
J. Comput. Phys., 2012
2011
J. Comput. Phys., 2011
Equivalence of onlattice stochastic chemical kinetics with the wellmixed chemical master equation in the limit of fast diffusion.
Comput. Chem. Eng., 2011
2010
Adaptive coarsegrained Monte Carlo simulation of reaction and diffusion dynamics in heterogeneous plasma membranes.
BMC Bioinform., 2010
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010
2007
A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks.
BMC Bioinform., 2007
2005
Time accelerated Monte Carlo simulations of biological networks using the binomial rleap method.
Bioinform., 2005