Doruk Bozdag

According to our database, Doruk Bozdag authored at least 23 papers between 2005 and 2013.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2013

Benchmarking short sequence mapping tools.

Ayat Hatem, Doruk Bozdag, Amanda E. Toland, Ümit V. Çatalyürek

BMC Bioinform., 2013

2012

Optimizing the stretch of independent tasks on a cluster: From sequential tasks to moldable tasks.

Erik Saule, Doruk Bozdag, Ümit V. Çatalyürek

J. Parallel Distributed Comput., 2012

2011

Benchmarking Short Sequence Mapping Tools.

Ayat Hatem, Doruk Bozdag, Ümit V. Çatalyürek

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010

Distributed-Memory Parallel Algorithms for Distance-2 Coloring and Related Problems in Derivative Computation.

Doruk Bozdag, Ümit V. Çatalyürek, Assefaw H. Gebremedhin, Fredrik Manne, Erik G. Boman, Füsun Özgüner

SIAM J. Sci. Comput., 2010

A Moldable Online Scheduling Algorithm and Its Application to Parallel Short Sequence Mapping.

Erik Saule, Doruk Bozdag, Ümit V. Çatalyürek

Proceedings of the Job Scheduling Strategies for Parallel Processing, 2010

Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform.

Doruk Bozdag, Ayat Hatem, Ümit V. Çatalyürek

Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

Comparative analysis of biclustering algorithms.

Doruk Bozdag, Ashwin S. Kumar, Ümit V. Çatalyürek

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009

Compaction of Schedules and a Two-Stage Approach for Duplication-Based DAG Scheduling.

Doruk Bozdag, Füsun Özgüner, Ümit V. Çatalyürek

IEEE Trans. Parallel Distributed Syst., 2009

A repartitioning hypergraph model for dynamic load balancing.

Ümit V. Çatalyürek, Erik G. Boman, Karen D. Devine, Doruk Bozdag, Robert T. Heaphy, Lee Ann Riesen

J. Parallel Distributed Comput., 2009

Parallel short sequence mapping for high throughput genome sequencing.

Doruk Bozdag, Catalin C. Barbacioru, Ümit V. Çatalyürek

Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

Parallelization of Mapping Algorithms for Next Generation Sequencing Applications.

Doruk Bozdag, Catalin C. Barbacioru, Ümit V. Çatalyürek

Proceedings of the Combinatorial Scientific Computing, 01.02. - 06.02.2009, 2009

A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments.

Hatice Gulcin Ozer, Doruk Bozdag, Terry Camerlengo, Jiejun Wu, Yi-Wen Huang, Timothy D. R. Hartley, Jeffrey D. Parvin, Tim Hui-Ming Huang, Ümit V. Çatalyürek, Kun Huang

Proceedings of the Bioinformatics and Computational Biology, 2009

A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets.

Doruk Bozdag, Jeffrey D. Parvin, Ümit V. Çatalyürek

Proceedings of the Bioinformatics and Computational Biology, 2009

2008

A framework for scalable greedy coloring on distributed-memory parallel computers.

Doruk Bozdag, Assefaw Hadish Gebremedhin, Fredrik Manne, Erik G. Boman, Ümit V. Çatalyürek

J. Parallel Distributed Comput., 2008

2007

Hypergraph-based Dynamic Load Balancing for Adaptive Scientific Computations.

Ümit V. Çatalyürek, Erik G. Boman, Karen D. Devine, Doruk Bozdag, Robert T. Heaphy, Lee Ann Riesen

Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

2006

Data harvesting with mobile elements in wireless sensor networks.

Yaoyao Gu, Doruk Bozdag, Robert W. Brewer, Eylem Ekici

Comput. Networks, 2006

Mobility-based communication in wireless sensor networks.

Eylem Ekici, Yaoyao Gu, Doruk Bozdag

IEEE Commun. Mag., 2006

Mobile Element Based Differentiated Message Delivery in Wireless Sensor Networks.

Yaoyao Gu, Doruk Bozdag, Eylem Ekici

Proceedings of the 2006 International Symposium on a World of Wireless, 2006

A task duplication based bottom-up scheduling algorithm for heterogeneous environments.

Doruk Bozdag, Ümit V. Çatalyürek, Füsun Özgüner

Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

2005

Partitioning based mobile element scheduling in wireless sensor networks.

Yaoyao Gu, Doruk Bozdag, Eylem Ekici, Füsun Özgüner, Chang-Gun Lee

Proceedings of the Second Annual IEEE Communications Society Conference on Sensor and Ad Hoc Communications and Networks, 2005

A Task Duplication Based Scheduling Algorithm Using Partial Schedules.

Doruk Bozdag, Füsun Özgüner, Eylem Ekici, Ümit V. Çatalyürek

Proceedings of the 34th International Conference on Parallel Processing (ICPP 2005), 2005

A Parallel Distance-2 Graph Coloring Algorithm for Distributed Memory Computers.

Doruk Bozdag, Ümit V. Çatalyürek, Assefaw Hadish Gebremedhin, Fredrik Manne, Erik G. Boman, Füsun Özgüner

Proceedings of the High Performance Computing and Communications, 2005

A Scalable Parallel Graph Coloring Algorithm for Distributed Memory Computers.

Erik G. Boman, Doruk Bozdag, Ümit V. Çatalyürek, Assefaw Hadish Gebremedhin, Fredrik Manne

Proceedings of the Euro-Par 2005, Parallel Processing, 11th International Euro-Par Conference, Lisbon, Portugal, August 30, 2005