Ümit V. Çatalyürek

According to our database1, Ümit V. Çatalyürek
  • authored at least 214 papers between 1995 and 2018.
  • has a "Dijkstra number"2 of three.

Awards

IEEE Fellow

IEEE Fellow 2016, "For contributions to combinatorial scientific computing and parallel computing".

Timeline

Legend:

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In proceedings 
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PhD thesis 
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Links

Homepage:

On csauthors.net:

Bibliography

2018
A resource provisioning framework for bioinformatics applications in multi-cloud environments.
Future Generation Comp. Syst., 2018

An Iterative Global Structure-Assisted Labeled Network Aligner.
CoRR, 2018

2017
Nucleus Decompositions for Identifying Hierarchy of Dense Subgraphs.
TWEB, 2017

Graph Manipulations for Fast Centrality Computation.
TKDD, 2017

Guest Editor's Introduction: Selected Papers from ACM-BCB 2014.
IEEE/ACM Trans. Comput. Biology Bioinform., 2017

Active Betweenness Cardinality: Algorithms and Applications.
CoRR, 2017

GABB Keynote.
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, 2017

Acyclic Partitioning of Large Directed Acyclic Graphs.
Proceedings of the 17th IEEE/ACM International Symposium on Cluster, 2017

2016
Incremental k-core decomposition: algorithms and evaluation.
VLDB J., 2016

Multi-Jagged: A Scalable Parallel Spatial Partitioning Algorithm.
IEEE Trans. Parallel Distrib. Syst., 2016

SONIC: streaming overlapping community detection.
Data Min. Knowl. Discov., 2016

Efficacy of the SU(3) scheme for ab initio large-scale calculations beyond the lightest nuclei.
Computer Physics Communications, 2016

Visual analytics on the spread of pathogens.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2015
An Out-of-Core Task-based Middleware for Data-Intensive Scientific Computing.
Proceedings of the Handbook on Data Centers, 2015

Incremental closeness centrality in distributed memory.
Parallel Computing, 2015

Regularizing graph centrality computations.
J. Parallel Distrib. Comput., 2015

Hypergraph partitioning for multiple communication cost metrics: Model and methods.
J. Parallel Distrib. Comput., 2015

Mitigating bias in planning two-colour microarray experiments.
IJDMB, 2015

Finding the Hierarchy of Dense Subgraphs using Nucleus Decompositions.
Proceedings of the 24th International Conference on World Wide Web, 2015

Syndromic Surveillance of Infectious Diseases meets Molecular Epidemiology in a Workflow and Phylogeographic Application.
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Fast and High Quality Topology-Aware Task Mapping.
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium, 2015

Spaler: Spark and GraphX based de novo genome assembler.
Proceedings of the 2015 IEEE International Conference on Big Data, 2015

MICA: MicroRNA integration for active module discovery.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

A Novel Multiple Choice Question Generation Strategy: Alternative Uses for Controlled Vocabulary Thesauri in Biomedical-Sciences Education.
Proceedings of the AMIA 2015, 2015

2014
Diversifying Citation Recommendations.
ACM TIST, 2014

Exploring the future of out-of-core computing with compute-local non-volatile memory.
Scientific Programming, 2014

Finding the Hierarchy of Dense Subgraphs using Nucleus Decompositions.
CoRR, 2014

On Distributed Graph Coloring with Iterative Recoloring.
CoRR, 2014

Massively multithreaded maxflow for image segmentation on the Cray XMT-2.
Concurrency and Computation: Practice and Experience, 2014

mrSNP: Software to detect SNP effects on microRNA binding.
BMC Bioinformatics, 2014

Hardware/Software Vectorization for Closeness Centrality on Multi-/Many-Core Architectures.
Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

HiCOMB Keynote and Invited Talks.
Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

Exploiting Geometric Partitioning in Task Mapping for Parallel Computers.
Proceedings of the 2014 IEEE 28th International Parallel and Distributed Processing Symposium, 2014

Extracting Maximal Exact Matches on GPU.
Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

Author's retrospective for biomedical image analysis on a cooperative cluster of gpus and multicores.
Proceedings of the ACM International Conference on Supercomputing 25th Anniversary Volume, 2014

Wide-area overlay networking to manage science DMZ accelerated flows.
Proceedings of the International Conference on Computing, Networking and Communications, 2014

2013
Fast recommendation on bibliographic networks with sparse-matrix ordering and partitioning.
Social Netw. Analys. Mining, 2013

Streaming Algorithms for k-core Decomposition.
PVLDB, 2013

A survey of pipelined workflow scheduling: Models and algorithms.
ACM Comput. Surv., 2013

GPU accelerated maximum cardinality matching algorithms for bipartite graphs
CoRR, 2013

Incremental Algorithms for Network Management and Analysis based on Closeness Centrality
CoRR, 2013

Performance Evaluation of Sparse Matrix Multiplication Kernels on Intel Xeon Phi
CoRR, 2013

Benchmarking short sequence mapping tools.
BMC Bioinformatics, 2013

A comparative analysis of biclustering algorithms for gene expression data.
Briefings in Bioinformatics, 2013

Diversified recommendation on graphs: pitfalls, measures, and algorithms.
Proceedings of the 22nd International World Wide Web Conference, 2013

Shattering and Compressing Networks for Betweenness Centrality.
Proceedings of the 13th SIAM International Conference on Data Mining, 2013

Exploring the future of out-of-core computing with compute-local non-volatile memory.
Proceedings of the International Conference for High Performance Computing, 2013

Performance Evaluation of Sparse Matrix Multiplication Kernels on Intel Xeon Phi.
Proceedings of the Parallel Processing and Applied Mathematics, 2013

Analysis of Partitioning Models and Metrics in Parallel Sparse Matrix-Vector Multiplication.
Proceedings of the Parallel Processing and Applied Mathematics, 2013

TheAdvisor: a webservice for academic recommendation.
Proceedings of the 13th ACM/IEEE-CS Joint Conference on Digital Libraries, 2013

A Push-Relabel-Based Maximum Cardinality Bipartite Matching Algorithm on GPUs.
Proceedings of the 42nd International Conference on Parallel Processing, 2013

Hypergraph Sparsification and Its Application to Partitioning.
Proceedings of the 42nd International Conference on Parallel Processing, 2013

GPU Accelerated Maximum Cardinality Matching Algorithms for Bipartite Graphs.
Proceedings of the Euro-Par 2013 Parallel Processing, 2013

STREAMER: A distributed framework for incremental closeness centrality computation.
Proceedings of the 2013 IEEE International Conference on Cluster Computing, 2013

Incremental algorithms for closeness centrality.
Proceedings of the 2013 IEEE International Conference on Big Data, 2013

PRASE: PageRank-based Active Subnetwork Extraction.
Proceedings of the ACM Conference on Bioinformatics, 2013

Masher: Mapping Long(er) Reads with Hash-based Genome Indexing on GPUs.
Proceedings of the ACM Conference on Bioinformatics, 2013

Towards a personalized, scalable, and exploratory academic recommendation service.
Proceedings of the Advances in Social Networks Analysis and Mining 2013, 2013

Betweenness centrality on GPUs and heterogeneous architectures.
Proceedings of the 6th Workshop on General Purpose Processor Using Graphics Processing Units, 2013

2012
The Zoltan and Isorropia parallel toolkits for combinatorial scientific computing: Partitioning, ordering and coloring.
Scientific Programming, 2012

Partitioning Hypergraphs in Scientific Computing Applications through Vertex Separators on Graphs.
SIAM J. Scientific Computing, 2012

Improving performance of adaptive component-based dataflow middleware.
Parallel Computing, 2012

Graph coloring algorithms for multi-core and massively multithreaded architectures.
Parallel Computing, 2012

Merging network patterns: a general framework to summarize biomedical network data.
NetMAHIB, 2012

Load-balancing spatially located computations using rectangular partitions.
J. Parallel Distrib. Comput., 2012

Optimizing the stretch of independent tasks on a cluster: From sequential tasks to moldable tasks.
J. Parallel Distrib. Comput., 2012

Color and texture analysis on emerging parallel architectures.
IJHPCA, 2012

Shattering and Compressing Networks for Centrality Analysis
CoRR, 2012

Diversifying Citation Recommendations
CoRR, 2012

Graph Coloring Algorithms for Muti-core and Massively Multithreaded Architectures
CoRR, 2012

Recommendation on Academic Networks using Direction Aware Citation Analysis
CoRR, 2012

Optimizing dataflow applications on heterogeneous environments.
Cluster Computing, 2012

An Early Evaluation of the Scalability of Graph Algorithms on the Intel MIC Architecture.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

Scalable Hybrid Implementation of Graph Coloring Using MPI and OpenMP.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

Multithreaded Clustering for Multi-level Hypergraph Partitioning.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium, 2012

An Out-of-Core Dataflow Middleware to Reduce the Cost of Large Scale Iterative Solvers.
Proceedings of the 41st International Conference on Parallel Processing Workshops, 2012

On Shared-Memory Parallelization of a Sparse Matrix Scaling Algorithm.
Proceedings of the 41st International Conference on Parallel Processing, 2012

A partitioning-based divisive clustering technique for maximizing the modularity.
Proceedings of the Graph Partitioning and Graph Clustering, 2012

UMPa: A multi-objective, multi-level partitioner for communication minimization.
Proceedings of the Graph Partitioning and Graph Clustering, 2012

An Out-of-Core Eigensolver on SSD-equipped Clusters.
Proceedings of the 2012 IEEE International Conference on Cluster Computing, 2012

Microarray vs. RNA-Seq: a comparison for active subnetwork discovery.
Proceedings of the ACM International Conference on Bioinformatics, 2012

Fast Recommendation on Bibliographic Networks.
Proceedings of the International Conference on Advances in Social Networks Analysis and Mining, 2012

2011
Hypergraph Partitioning.
Proceedings of the Encyclopedia of Parallel Computing, 2011

PaToH (Partitioning Tool for Hypergraphs).
Proceedings of the Encyclopedia of Parallel Computing, 2011

Hypergraph Partitioning-Based Fill-Reducing Ordering for Symmetric Matrices.
SIAM J. Scientific Computing, 2011

Optimizing latency and throughput of application workflows on clusters.
Parallel Computing, 2011

Color and texture analysis using emerging parallel architectures.
IJHPCA, 2011

Load-Balancing Spatially Located Computations using Rectangular Partitions
CoRR, 2011

Hypergraph Partitioning through Vertex Separators on Graphs
CoRR, 2011

Partitioning Spatially Located Computations Using Rectangles.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

Distributed-Memory Parallel Algorithms for Matching and Coloring.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

Integrated data placement and task assignment for scientific workflows in clouds.
Proceedings of the DIDC'11, 2011

Acceleration of Two Point Correlation Function Calculation for Pathology Image Segmentation.
Proceedings of the 2011 IEEE International Conference on Healthcare Informatics, 2011

Improving graph coloring on distributed-memory parallel computers.
Proceedings of the 18th International Conference on High Performance Computing, 2011

On Reducing I/O Overheads in Large-Scale Invariant Subspace Projections.
Proceedings of the Euro-Par 2011: Parallel Processing Workshops - CCPI, CGWS, HeteroPar, HiBB, HPCVirt, HPPC, HPSS, MDGS, ProPer, Resilience, UCHPC, VHPC, Bordeaux, France, August 29, 2011

Benchmarking Short Sequence Mapping Tools.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010
On Two-Dimensional Sparse Matrix Partitioning: Models, Methods, and a Recipe.
SIAM J. Scientific Computing, 2010

Development of a code-agnostic computational infrastructure for the dynamic generation of accident progression event trees.
Rel. Eng. & Sys. Safety, 2010

A Matrix Partitioning Interface to PaToH in MATLAB.
Parallel Computing, 2010

On the Scalability of Hypergraph Models for Sparse Matrix Partitioning.
Proceedings of the 18th Euromicro Conference on Parallel, 2010

A Moldable Online Scheduling Algorithm and Its Application to Parallel Short Sequence Mapping.
Proceedings of the Job Scheduling Strategies for Parallel Processing, 2010

Message from the Workshops Chair.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

An Image Analysis Approach for Detecting Malignant Cells in Digitized H&E-stained Histology Images of Follicular Lymphoma.
Proceedings of the 20th International Conference on Pattern Recognition, 2010

Run-time optimizations for replicated dataflows on heterogeneous environments.
Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010

Automatic dataflow application tuning for heterogeneous systems.
Proceedings of the 2010 International Conference on High Performance Computing, 2010

Comparative analysis of biclustering algorithms.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009
Histopathological Image Analysis Using Model-Based Intermediate Representations and Color Texture: Follicular Lymphoma Grading.
Signal Processing Systems, 2009

An Integrated Approach to Locality-Conscious Processor Allocation and Scheduling of Mixed-Parallel Applications.
IEEE Trans. Parallel Distrib. Syst., 2009

Compaction of Schedules and a Two-Stage Approach for Duplication-Based DAG Scheduling.
IEEE Trans. Parallel Distrib. Syst., 2009

Computer-aided prognosis of neuroblastoma on whole-slide images: Classification of stromal development.
Pattern Recognition, 2009

A repartitioning hypergraph model for dynamic load balancing.
J. Parallel Distrib. Comput., 2009

A Knowledge-Anchored Integrative Image Search and Retrieval System.
J. Digital Imaging, 2009

Stroma classification for neuroblastoma on graphics processors.
IJDMB, 2009

Parallel materialization of large ABoxes.
Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009

Exploring the GPU for Enhancing Parallelism on Color and Texture Analysis.
Proceedings of the Parallel Computing: From Multicores and GPU's to Petascale, 2009

A component-based framework for the Cell Broadband Engine.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

Parallel short sequence mapping for high throughput genome sequencing.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

High-performance signal processing on emerging many-core architectures using cuda.
Proceedings of the 2009 IEEE International Conference on Multimedia and Expo, 2009

Getting Started with Zoltan: A Short Tutorial.
Proceedings of the Combinatorial Scientific Computing, 01.02. - 06.02.2009, 2009

Parallelization of Mapping Algorithms for Next Generation Sequencing Applications.
Proceedings of the Combinatorial Scientific Computing, 01.02. - 06.02.2009, 2009

Combinatorial Problems in High-Performance Computing: Partitioning.
Proceedings of the Combinatorial Scientific Computing, 01.02. - 06.02.2009, 2009

Coordinating the use of GPU and CPU for improving performance of compute intensive applications.
Proceedings of the 2009 IEEE International Conference on Cluster Computing, August 31, 2009

Investigating the use of GPU-accelerated nodes for SAR image formation.
Proceedings of the 2009 IEEE International Conference on Cluster Computing, August 31, 2009

A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments.
Proceedings of the Bioinformatics and Computational Biology, 2009

A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets.
Proceedings of the Bioinformatics and Computational Biology, 2009

2008
Large-Scale Biomedical Image Analysis in Grid Environments.
IEEE Trans. Information Technology in Biomedicine, 2008

A framework for scalable greedy coloring on distributed-memory parallel computers.
J. Parallel Distrib. Comput., 2008

BlueGene/L applications: Parallelism On a Massive Scale.
IJHPCA, 2008

e-Science, caGrid, and Translational Biomedical Research.
IEEE Computer, 2008

Using overlays for efficient data transfer over shared wide-area networks.
Proceedings of the ACM/IEEE Conference on High Performance Computing, 2008

Translational research design templates, Grid computing, and HPC.
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008

A dynamic scheduling approach for coordinated wide-area data transfers using GridFTP.
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008

Biomedical image analysis on a cooperative cluster of GPUs and multicores.
Proceedings of the 22nd Annual International Conference on Supercomputing, 2008

A Duplication Based Algorithm for Optimizing Latency Under Throughput Constraints for Streaming Workflows.
Proceedings of the 2008 International Conference on Parallel Processing, 2008

Texture classification using nonlinear color quantization: Application to histopathological image analysis.
Proceedings of the IEEE International Conference on Acoustics, 2008

Multi-hop path splitting and multi-pathing optimizations for data transfers over shared wide-area networks using gridFTP.
Proceedings of the 17th International Symposium on High-Performance Distributed Computing (HPDC-17 2008), 2008

Processing of Large-Scale Biomedical Images on a Cluster of Multicore CPUs and GPUs.
Proceedings of the High Speed and Large Scale Scientific Computing - Selected Papers from the High Performance Computing Workshop, Cetraro, Italy, June 30, 2008

2007
A global address space framework for locality aware scheduling of block-sparse computations.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Hypergraph-based Dynamic Load Balancing for Adaptive Scientific Computations.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Intelligent Optimization of Parallel and Distributed Applications.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Dynamic Data-Driven Systems Approach for Simulation Based Optimizations.
Proceedings of the Computational Science, 2007

Optimizing multiple queries on scientific datasets with partial replicas.
Proceedings of the 8th IEEE/ACM International Conference on Grid Computing (GRID 2007), 2007

Toward Optimizing Latency Under Throughput Constraints for Application Workflows on Clusters.
Proceedings of the Euro-Par 2007, 2007

Scheduling File Transfers for Data-Intensive Jobs on Heterogeneous Clusters.
Proceedings of the Euro-Par 2007, 2007

Performance vs. accuracy trade-offs for large-scale image analysis applications.
Proceedings of the 2007 IEEE International Conference on Cluster Computing, 2007

Efficient processing of pathological images using the grid: computer-aided prognosis of neuroblastoma.
Proceedings of the 5th IEEE workshop on Challenges of large applications in distributed environments, 2007

An Efficient and Reliable Scientific Workflow System.
Proceedings of the Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2007), 2007

Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

Computerized Pathological Image Analysis For Neuroblastoma Prognosis.
Proceedings of the AMIA 2007, 2007

2006
Application of Information Technology: An XML-based System for Synthesis of Data from Disparate Databases.
JAMIA, 2006

Supporting Scalable and Distributed Data Subsetting and Aggregation in Large-Scale Seismic Data Analysis.
IJHPCA, 2006

Models, methods and middleware for grid-enabled multiphysics oil reservoir management.
Eng. Comput. (Lond.), 2006

Imaging and visual analysis - Large image correction and warping in a cluster environment.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

Data management and query - Hypergraph partitioning for automatic memory hierarchy management.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

Improving Functional Modularity in Protein-Protein Interactions Graphs Using Hub-Induced Subgraphs.
Proceedings of the Knowledge Discovery in Databases: PKDD 2006, 2006

A Data Locality Aware Online Scheduling Approach for I/O-Intensive Jobs with File Sharing.
Proceedings of the Job Scheduling Strategies for Parallel Processing, 2006

An approach to locality-conscious load balancing and transparent memory hierarchy management with a global-address-space parallel programming model.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

An extensible global address space framework with decoupled task and data abstractions.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

Parallel hypergraph partitioning for scientific computing.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

A task duplication based bottom-up scheduling algorithm for heterogeneous environments.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

Using Space and Attribute Partitioned Partial Replicas for Data Subsetting and Aggregation Queries.
Proceedings of the 2006 International Conference on Parallel Processing (ICPP 2006), 2006

An Integrated Approach for Processor Allocation and Scheduling of Mixed-Parallel Applications.
Proceedings of the 2006 International Conference on Parallel Processing (ICPP 2006), 2006

On Creating Efficient Object-relational Views of Scientific Datasets.
Proceedings of the 2006 International Conference on Parallel Processing (ICPP 2006), 2006

Task Scheduling and File Replication for Data-Intensive Jobs with Batch-shared I/O.
Proceedings of the 15th IEEE International Symposium on High Performance Distributed Computing, 2006

Service-Based Access to and Processing of Large Scientific Datasets.
Proceedings of the High Performance Computing and Grids in Action, 2006

Locality Conscious Processor Allocation and Scheduling for Mixed Parallel Applications.
Proceedings of the 2006 IEEE International Conference on Cluster Computing, 2006

MSSG: A Framework for Massive-Scale Semantic Graphs.
Proceedings of the 2006 IEEE International Conference on Cluster Computing, 2006

Distributed dynamic event tree generation for reliability and risk assessment.
Proceedings of the 2006 IEEE Challenges of Large Applications in Distributed Environments, 2006

2005
XML database support for distributed execution of data-intensive scientific workflows.
SIGMOD Record, 2005

Application of Information Technology: A Grid-Based Image Archival and Analysis System.
JAMIA, 2005

Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies.
Future Generation Comp. Syst., 2005

A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies.
Concurrency - Practice and Experience, 2005

A Scalable Distributed Parallel Breadth-First Search Algorithm on BlueGene/L.
Proceedings of the ACM/IEEE SC2005 Conference on High Performance Networking and Computing, 2005

Grid-based management of biomedical data using an XML-based distributed data management system.
Proceedings of the 2005 ACM Symposium on Applied Computing (SAC), 2005

Supporting Large Scale Medical and Scientific Datasets.
Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005

A Task Duplication Based Scheduling Algorithm Using Partial Schedules.
Proceedings of the 34th International Conference on Parallel Processing (ICPP 2005), 2005

Towards Dynamic Data-Driven Optimization of Oil Well Placement.
Proceedings of the Computational Science, 2005

A Parallel Distance-2 Graph Coloring Algorithm for Distributed Memory Computers.
Proceedings of the High Performance Computing and Communications, 2005

A Scalable Parallel Graph Coloring Algorithm for Distributed Memory Computers.
Proceedings of the Euro-Par 2005, Parallel Processing, 11th International Euro-Par Conference, Lisbon, Portugal, August 30, 2005

Servicing Seismic and Oil Reservoir Simulation Data Through Grid Data Services.
Proceedings of the Data Management in Grids, First VLDB Workshop, 2005

Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying.
Proceedings of the 2005 IEEE International Conference on Cluster Computing (CLUSTER 2005), September 26, 2005

Servicing range queries on multidimensional datasets with partial replicas.
Proceedings of the 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005

A hypergraph partitioning based approach for scheduling of tasks with batch-shared I/O.
Proceedings of the 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005

2004
Permuting Sparse Rectangular Matrices into Block-Diagonal Form.
SIAM J. Scientific Computing, 2004

Supporting SQL-3 Aggregations on Grid-Based Data Repositories.
Proceedings of the Languages and Compilers for High Performance Computing, 2004

Application of Grid-Enabled Technologies for Solving Optimization Problems in Data-Driven Reservoir Studies.
Proceedings of the Computational Science, 2004

Strategies for Using Additional Resources in Parallel Hash-Based Join Algorithms.
Proceedings of the 13th International Symposium on High-Performance Distributed Computing (HPDC-13 2004), 2004

An Approach for Automatic Data Virtualization.
Proceedings of the 13th International Symposium on High-Performance Distributed Computing (HPDC-13 2004), 2004

Tools for efficient subsetting and pipelined processing of large scale, distributed biomedical image data.
Proceedings of the Grid Computing: The New Frontier of High Performance Computing [post-proceedings of the High Performance Computing Workshop, 2004

Use of PVFS for Efficient Execution of Jobs with Pipeline-Shared I/O.
Proceedings of the 5th International Workshop on Grid Computing (GRID 2004), 2004

A distributed data management middleware for data-driven application systems.
Proceedings of the 2004 IEEE International Conference on Cluster Computing (CLUSTER 2004), 2004

Serving queries to multi-resolution datasets on disk-based storage clusters.
Proceedings of the 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2004), 2004

2003
The virtual microscope.
IEEE Trans. Information Technology in Biomedicine, 2003

Database Support for Data-Driven Scientific Applications in the Grid.
Parallel Processing Letters, 2003

Optimizing Reduction Computations In a Distributed Environment.
Proceedings of the ACM/IEEE SC2003 Conference on High Performance Networking and Computing, 2003

A Component-based Implementation of Multiple Sequence Alignment.
Proceedings of the 2003 ACM Symposium on Applied Computing (SAC), 2003


Impact of High Performance Sockets on Data Intensive Applications.
Proceedings of the 12th International Symposium on High-Performance Distributed Computing (HPDC-12 2003), 2003

Applying Database Support for Large Scale Data Driven Science in Distributed Environments.
Proceedings of the 4th International Workshop on Grid Computing (GRID 2003), 2003

Image Processing or the Grid: A Toolkit or Building Grid-enabled Image Processing Applications.
Proceedings of the 3rd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2003), 2003

2002
Processing large-scale multi-dimensional data in parallel and distributed environments.
Parallel Computing, 2002

Executing multiple pipelined data analysis operations in the grid.
Proceedings of the 2002 ACM/IEEE conference on Supercomputing, 2002

Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client Environments.
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002

Efficient Manipulation of Large Datasets on Heterogeneous Storage Systems.
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002

2001
Distributed processing of very large datasets with DataCutter.
Parallel Computing, 2001

Visualization of Large Data Sets with the Active Data Repository.
IEEE Computer Graphics and Applications, 2001

A hypergraph-partitioning approach for coarse-grain decomposition.
Proceedings of the 2001 ACM/IEEE conference on Supercomputing, 2001

A Hypergraph-Based Workload Partitioning Strategy for Parallel Data Aggregation.
Proceedings of the Tenth SIAM Conference on Parallel Processing for Scientific Computing, 2001

A Fine-Grain Hypergraph Model for 2D Decomposition of Sparse Matrices.
Proceedings of the 15th International Parallel & Distributed Processing Symposium (IPDPS-01), 2001

Performance Optimization for Data Intensive Grid Applications.
Proceedings of the 3rd Annual International Workshop on Active Middleware Services (AMS 2001), 2001

1999
Hypergraph-Partitioning-Based Decomposition for Parallel Sparse-Matrix Vector Multiplication.
IEEE Trans. Parallel Distrib. Syst., 1999

1996
Decomposing Irregularly Sparse Matrices for Parallel Matrix-Vector Multiplication.
Proceedings of the Parallel Algorithms for Irregularly Structured Problems, 1996

1995
Decomposing Linear Programs for Parallel Solution.
Proceedings of the Applied Parallel Computing, 1995


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