Tim Hui-Ming Huang

According to our database1, Tim Hui-Ming Huang authored at least 33 papers between 1995 and 2014.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2014
BIMMER: a novel algorithm for detecting differential DNA methylation regions from MBDCap-seq data.
BMC Bioinformatics, 2014

A personalized committee classification approach to improving prediction of breast cancer metastasis.
Bioinformatics, 2014

2013
BIMMER: A Bi-layer hidden Markov model for differential methylation analysis.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
A dynamic time order network for time-series gene expression data analysis.
BMC Systems Biology, 2012

A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data.
BMC Bioinformatics, 2012

Network-based classification of recurrent endometrial cancers using high-throughput DNA methylation data.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.
Nucleic Acids Research, 2011

Comparing Multiple Chip-Sequencing Experiments.
J. Bioinformatics and Computational Biology, 2011

A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer.
BMC Systems Biology, 2011

Identifying hypermethylated CpG islands using a quantile regression model.
BMC Bioinformatics, 2011

DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models.
Bioinformatics, 2011

Preprocessing differential methylation hybridization microarray data.
BioData Mining, 2011

An ERα/modulator regulatory network in the breast cancer cells.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Chromatin signature analysis and prediction of genome-wide novel promoters using finite mixture model.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

2010
HRTBLDb: an informative data resource for hormone receptors target binding loci.
Nucleic Acids Research, 2010

Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data.
BMC Systems Biology, 2010

Genome-Wide DNA Methylation Profiling in 40 Breast Cancer Cell Lines.
Proceedings of the Advanced Intelligent Computing Theories and Applications, 2010

2009
A robust unified approach to analyzing methylation and gene expression data.
Computational Statistics & Data Analysis, 2009

An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.
BMC Systems Biology, 2009

Identifying differentially methylated genes using mixed effect and generalized least square models.
BMC Bioinformatics, 2009

Comparative study on ChIP-seq data: normalization and binding pattern characterization.
Bioinformatics, 2009

A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments.
Proceedings of the Bioinformatics and Computational Biology, 2009

Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

2008
Probe signal correction for differential methylation hybridization experiments.
BMC Bioinformatics, 2008

Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands.
BMC Bioinformatics, 2008

Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells.
Bioinformatics, 2008

Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences.
Proceedings of the Biocomputing 2008, 2008

2007
Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data.
BMC Bioinformatics, 2007

2006
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.
Nucleic Acids Research, 2006

A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.
Bioinformatics, 2006

2005
Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System.
Journal of Computational Biology, 2005

2001
Online Microarray Laboratory Information Management System (M-LIMS): Linking Health Informatics and Bioinformatics.
Proceedings of the AMIA 2001, 2001

1995
A Fuzzy Logic Rule-Based System for Chromosome Recognition.
Proceedings of the Eighth Annual IEEE Symposium on Computer-Based Medical Systems (CBMS'95), 1995


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