Douglas L. Brutlag

According to our database, Douglas L. Brutlag authored at least 47 papers between 1982 and 2007.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2007

Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values.

Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe

J. Comput. Biol., 2007

2006

Development and validation of a consistency based multiple structure alignment algorithm.

Jessica Ebert, Douglas L. Brutlag

Bioinform., 2006

Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation.

Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe

Proceedings of the Research in Computational Molecular Biology, 2006

MotifCut: regulatory motifs finding with maximum density subgraphs.

Eugene Fratkin, Brian T. Naughton, Douglas L. Brutlag, Serafim Batzoglou

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

Sequence Motifs: Highly Predictive Features of Protein Function.

Asa Ben-Hur, Douglas L. Brutlag

Proceedings of the Feature Extraction - Foundations and Applications, 2006

2005

eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity.

Qiaojuan Jane Su, Lin Lu, Serge Saxonov, Douglas L. Brutlag

Nucleic Acids Res., 2005

Homology Modeling of a Human Glycine Alpha 1 Receptor Reveals a Plausible Anesthetic Binding Site.

Edward J. Bertaccini, Jessica Shapiro, Douglas L. Brutlag, James R. Trudell

J. Chem. Inf. Model., 2005

2004

Computational functional genomics.

Mike P. Liang, Olga G. Troyanskaya, Alain Laederach, Douglas L. Brutlag, Russ B. Altman

IEEE Signal Process. Mag., 2004

FoldMiner and LOCK 2: protein structure comparison and motif discovery on the web.

Jessica Shapiro, Douglas L. Brutlag

Nucleic Acids Res., 2004

A suite of web-based programs to search for transcriptional regulatory motifs.

Yueyi Liu, Liping Wei, Serafim Batzoglou, Douglas L. Brutlag, Jun S. Liu, Xiaole Shirley Liu

Nucleic Acids Res., 2004

Identifying Protein-Protein Interaction Sites on a Genome-Wide Scale.

Haidong Wang, Eran Segal, Asa Ben-Hur, Daphne Koller, Douglas L. Brutlag

Proceedings of the Advances in Neural Information Processing Systems 17 [Neural Information Processing Systems, 2004

2003

WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures.

Mike P. Liang, D. Rey Banatao, Teri E. Klein, Douglas L. Brutlag, Russ B. Altman

Nucleic Acids Res., 2003

3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs.

Steven P. Bennett, Lin Lu, Douglas L. Brutlag

Nucleic Acids Res., 2003

Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion.

Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma

J. Comput. Biol., 2003

3MOTIF: visualizing conserved protein sequence motifs in the protein structure database.

Steven P. Bennett, Craig G. Nevill-Manning, Douglas L. Brutlag

Bioinform., 2003

Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures.

Mike P. Liang, Douglas L. Brutlag, Russ B. Altman

Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

Remote homology detection: a motif based approach.

Asa Ben-Hur, Douglas L. Brutlag

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

Automatic Construction of 3D Structural Motifs for Protein Function Prediction.

Mike P. Liang, Douglas L. Brutlag, Russ B. Altman

Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2002

Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion.

Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe

Proceedings of the Algorithmic Foundations of Robotics V, 2002

Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion.

Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe

Proceedings of the Sixth Annual International Conference on Computational Biology, 2002

Using robotics to fold proteins and dock ligands.

Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

Stochastic roadmap simulation for the study of ligand-protein interactions.

Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

2001

The EMOTIF database.

Jimmy Y. Huang, Douglas L. Brutlag

Nucleic Acids Res., 2001

BioProspector: Discovering Conserved DNA Motifs in Upstream Regulatory Regions of Co-Expressed Genes.

X. Liu, Douglas L. Brutlag, Jun S. Liu

Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps.

Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe

Proceedings of the 2001 IEEE International Conference on Robotics and Automation, 2001

2000

Bayesian Segmentation of Protein Secondary Structure.

Scott C. Schmidler, Jun S. Liu, Douglas L. Brutlag

J. Comput. Biol., 2000

Fast probabilistic analysis of sequence function using scoring matrices.

Thomas D. Wu, Craig G. Nevill-Manning, Douglas L. Brutlag

Bioinform., 2000

1999

Minimal-Risk Scoring Matrices for Sequence Analysis.

Thomas D. Wu, Craig G. Nevill-Manning, Douglas L. Brutlag

J. Comput. Biol., 1999

A Motion Planning Approach to Flexible Ligand Binding.

Amit Pal Singh, Jean-Claude Latombe, Douglas L. Brutlag

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998

Regression Analysis of Multiple Protein Structures.

Thomas D. Wu, Scott C. Schmidler, Trevor Hastie, Douglas L. Brutlag

J. Comput. Biol., 1998

Viewpoint: Directions for Clinical Research and Genomic Research into the Next Decade: Implications for Informatics.

Thomas C. Rindfleisch, Douglas L. Brutlag

J. Am. Medical Informatics Assoc., 1998

1997

Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations.

Amit Pal Singh, Douglas L. Brutlag

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

Enumerating and Ranking Discrete Motifs.

Craig G. Nevill-Manning, Komal S. Sethi, Thomas D. Wu, Douglas L. Brutlag

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

1996

Discovering Empirically Conserved Amino Acid Substitution Groups in Databases of Protein Families.

Thomas D. Wu, Douglas L. Brutlag

Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996

1995

Identification of Protein Motifs Using Conserved Amino Acid Properties and Partitioning Techniques.

Thomas D. Wu, Douglas L. Brutlag

Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

1994

On Near-Optimal Alignments of Biological Sequences.

Dalit Naor, Douglas L. Brutlag

J. Comput. Biol., 1994

Discovering Side-Chain Correlations In alpha-Helices.

Tod M. Klingler, Douglas L. Brutlag

Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994

1993

BLAZE^TM: An Implementation of the Smith-Waterman Sequence Comparison Algorithm on a Massively Parallel Computer.

Douglas L. Brutlag, Jean-Pierre Dautricourt, Ron Diaz, Jeff Fier, Bruce Moxon, Richard Stamm

Comput. Chem., 1993

Detection of Correlations in tRNA Sequences with Structural Implications.

Tod M. Klingler, Douglas L. Brutlag

Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993

On Suboptimal Alignments of Biological Sequences.

Dalit Naor, Douglas L. Brutlag

Proceedings of the Combinatorial Pattern Matching, 4th Annual Symposium, 1993

1991

Knowledge-based simulation of DNA metabolism: prediction of enzyme action.

Douglas L. Brutlag, A. R. Galper, D. H. Millis

Comput. Appl. Biosci., 1991

1990

Improved sensitivity of biological sequence database searches.

Douglas L. Brutlag, Jean-Pierre Dautricourt, S. Maulik, J. Relph

Comput. Appl. Biosci., 1990

1986

BIONET: national computer resource for molecular biology.

Dennis H. Smith, Douglas L. Brutlag, Peter Friedland, Laurence H. Kedes

Nucleic Acids Res., 1986

1984

Rapid searches for complex patterns in biological molecules.

R. M. Abarbanel, Paul R. Wieneke, E. Mansfield, David A. Jaffe, Douglas L. Brutlag

Nucleic Acids Res., 1984

1982

GENESIS, a knowledge-based genetic engineering simulation system for representation of genetic data and experiment planning.

Peter Friedland, Laurence H. Kedes, Douglas L. Brutlag, Yumi Iwasaki, René Bach

Nucleic Acids Res., 1982

SEQ: a nucleotide sequence analysis and recombination system.

Douglas L. Brutlag, J. Clayton, Peter Friedland, Laurence H. Kedes

Nucleic Acids Res., 1982

MAXAMIZE. A DNA sequencing strategy advisor.

René Bach, Peter Friedland, Douglas L. Brutlag, Laurence H. Kedes

Nucleic Acids Res., 1982