Eric J. Alm

According to our database, Eric J. Alm authored at least 14 papers between 2005 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

MicrobiomeCensus estimates human population sizes from wastewater samples based on inter-individual variability in gut microbiomes.

Lin Zhang, Likai Chen, Xiaoqian (annie) Yu, Claire Duvallet, Siavash Isazadeh, Chengzhen Dai, Shinkyu Park, Katya Frois-Moniz, Fabio Duarte, Carlo Ratti, Eric J. Alm, Fangqiong Ling

PLoS Comput. Biol., September, 2022

2020

Longitudinal wastewater sampling in buildings reveals temporal dynamics of metabolites.

Ethan D. Evans, Chengzhen Dai, Siavash Isazadeh, Shinkyu Park, Carlo Ratti, Eric J. Alm

PLoS Comput. Biol., 2020

2018

Correcting for batch effects in case-control microbiome studies.

Sean M. Gibbons, Claire Duvallet, Eric J. Alm

PLoS Comput. Biol., 2018

2017

Two dynamic regimes in the human gut microbiome.

Sean M. Gibbons, Sean M. Kearney, Chris S. Smillie, Eric J. Alm

PLoS Comput. Biol., 2017

2016

Mobile genes in the human microbiome are structured from global to individual scales.

Ilana L. Brito, Suzan A. Yilmaz, K. Huang, Liyi Xu, Stacy D. Jupiter, Aaron P. Jenkins, Waisea Naisilisili, Manu V. Tamminen, Chris S. Smillie, Jennifer R. Wortman, Bruce W. Birren, Ramnik J. Xavier, Paul C. Blainey, A. K. Singh, Dirk Gevers, Eric J. Alm

Nat., 2016

2015

Improved gene tree error correction in the presence of horizontal gene transfer.

Mukul S. Bansal, Yi-Chieh Wu, Eric J. Alm, Manolis Kellis

Bioinform., 2015

2013

Reconciliation Revisited: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss.

Mukul S. Bansal, Eric J. Alm, Manolis Kellis

J. Comput. Biol., 2013

2012

Inferring Correlation Networks from Genomic Survey Data.

Jonathan Friedman, Eric J. Alm

PLoS Comput. Biol., 2012

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss.

Mukul S. Bansal, Eric J. Alm, Manolis Kellis

Bioinform., 2012

2010

Local Gene Regulation Details a Recognition Code within the LacI Transcriptional Factor Family.

Francisco M. Camas, Eric J. Alm, Juan F. Poyatos

PLoS Comput. Biol., 2010

MicrobesOnline: an integrated portal for comparative and functional genomics.

Paramvir S. Dehal, Marcin P. Joachimiak, Morgan N. Price, John T. Bates, Jason K. Baumohl, Dylan Chivian, Greg D. Friedland, Katherine H. Huang, Keith Keller, Pavel S. Novichkov, Inna Dubchak, Eric J. Alm, Adam P. Arkin

Nucleic Acids Res., 2010

2006

The Evolution of Two-Component Systems in Bacteria Reveals Different Strategies for Niche Adaptation.

Eric J. Alm, Katherine H. Huang, Adam P. Arkin

PLoS Comput. Biol., 2006

OpWise: Operons aid the identification of differentially expressed genes in bacterial microarray experiments.

Morgan N. Price, Adam P. Arkin, Eric J. Alm

BMC Bioinform., 2006

2005

Dissimilatory Metabolism of Nitrogen Oxides in Bacteria: Comparative Reconstruction of Transcriptional Networks.

Dmitry A. Rodionov, Inna Dubchak, Adam P. Arkin, Eric J. Alm, Mikhail S. Gelfand

PLoS Comput. Biol., 2005