Dmitry A. Rodionov

According to our database, Dmitry A. Rodionov authored at least 9 papers between 2005 and 2012.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2012

RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics.

Pavel S. Novichkov, Thomas S. Brettin, Elena S. Novichkova, Paramvir S. Dehal, Adam P. Arkin, Inna Dubchak, Dmitry A. Rodionov

Nucleic Acids Res., 2012

Automated Regulon Content Prediction and Estimation of PWM Quality.

Elena D. Stavrovskaya, Andrey A. Mironov, Dmitry A. Rodionov, Inna Dubchak, Pavel S. Novichkov

Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012

2010

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach.

Pavel S. Novichkov, Dmitry A. Rodionov, Elena D. Stavrovskaya, Elena S. Novichkova, Alexei E. Kazakov, Mikhail S. Gelfand, Adam P. Arkin, Andrey A. Mironov, Inna Dubchak

Nucleic Acids Res., 2010

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.

Pavel S. Novichkov, Olga N. Laikova, Elena S. Novichkova, Mikhail S. Gelfand, Adam P. Arkin, Inna Dubchak, Dmitry A. Rodionov

Nucleic Acids Res., 2010

Evolution of Regulatory Motifs of Bacterial Transcription Factors.

Konstantin Yu. Gorbunov, Olga N. Laikova, Dmitry A. Rodionov, Mikhail S. Gelfand, Vassily A. Lyubetsky

Silico Biol., 2010

2009

Evolution of Regulatory Systems in Bacteria (Invited Keynote Talk).

Mikhail S. Gelfand, Alexei E. Kazakov, Yuri D. Korostelev, Olga N. Laikova, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Dmitry A. Ravcheev, Dmitry A. Rodionov, Alexei G. Vitreschak

Proceedings of the Bioinformatics Research and Applications, 5th International Symposium, 2009

2007

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation.

Leslie Klis McNeil, Claudia Reich, Ramy K. Aziz, Daniela Bartels, Matthew Cohoon, Terry Disz, Robert A. Edwards, Svetlana Gerdes, Kaitlyn Hwang, Michael Kubal, Gohar Rem Margaryan, Folker Meyer, William Mihalo, Gary J. Olsen, Robert Olson, Andrei Osterman, Daniel Paarmann, Tobias Paczian, Bruce D. Parrello, Gordon D. Pusch, Dmitry A. Rodionov, Xinghua Shi, Olga Vassieva, Veronika Vonstein, Olga Zagnitko, Fangfang Xia, Jenifer Zinner, Ross A. Overbeek, Rick Stevens

Nucleic Acids Res., 2007

2006

Computational Reconstruction of Iron- and Manganese-Responsive Transcriptional Networks in α-Proteobacteria.

Dmitry A. Rodionov, Mikhail S. Gelfand, Jonathan D. Todd, Andrew R. J. Curson, Andrew W. B. Johnston

PLoS Comput. Biol., 2006

2005

Dissimilatory Metabolism of Nitrogen Oxides in Bacteria: Comparative Reconstruction of Transcriptional Networks.

Dmitry A. Rodionov, Inna Dubchak, Adam P. Arkin, Eric J. Alm, Mikhail S. Gelfand

PLoS Comput. Biol., 2005